Gene : Thecc1EG038182 T. cacao v1.1
Defline:  (1 of 5) PF00564//PF03108//PF04434//PF10551 - PB1 domain (PB1) // MuDR family transposase (DBD_Tnp_Mut) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  1303
Name:  ? Thecc1EG038182 Secondary Identifier:  ? PAC:27428993
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG038182 0.5kb upstream 0.5kb upstream 6116 true scaffold_9: 7579645-7585760 Theobroma cacao
Thecc1EG038182 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7579645-7580144 Theobroma cacao
Thecc1EG038182 0.5kb downstream 0.5kb downstream 6116 true scaffold_9: 7580145-7586260 Theobroma cacao
Thecc1EG038182 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7585761-7586260 Theobroma cacao
Thecc1EG038182 1.0kb upstream 1.0kb upstream 6616 true scaffold_9: 7579145-7585760 Theobroma cacao
Thecc1EG038182 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7579145-7580144 Theobroma cacao
Thecc1EG038182 1.0kb downstream 1.0kb downstream 6616 true scaffold_9: 7580145-7586760 Theobroma cacao
Thecc1EG038182 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7585761-7586760 Theobroma cacao
Thecc1EG038182 2.0kb upstream 2.0kb upstream 7616 true scaffold_9: 7578145-7585760 Theobroma cacao
Thecc1EG038182 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7578145-7580144 Theobroma cacao
Thecc1EG038182 2.0kb downstream 2.0kb downstream 7616 true scaffold_9: 7580145-7587760 Theobroma cacao
Thecc1EG038182 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7585761-7587760 Theobroma cacao
Thecc1EG038182 5.0kb upstream 5.0kb upstream 10616 true scaffold_9: 7575145-7585760 Theobroma cacao
Thecc1EG038182 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7575145-7580144 Theobroma cacao
Thecc1EG038182 5.0kb downstream 5.0kb downstream 10616 true scaffold_9: 7580145-7590760 Theobroma cacao
Thecc1EG038182 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7585761-7590760 Theobroma cacao
Thecc1EG038182 10.0kb upstream 10.0kb upstream 15616 true scaffold_9: 7570145-7585760 Theobroma cacao
Thecc1EG038182 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7570145-7580144 Theobroma cacao
Thecc1EG038182 10.0kb downstream 10.0kb downstream 15616 true scaffold_9: 7580145-7595760 Theobroma cacao
Thecc1EG038182 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7585761-7595760 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780266 5273 Angiosperm View MSA
123838365 5264 Brassicales-Malvales View MSA
124348197 5266 SBM View MSA
124248263 5268 Malvidae View MSA
124069490 5270 Rosid View MSA
123745666 5271 Pentapetalae View MSA
122771596 5272 Eudicot View MSA
121051888 5274 Embryophyte View MSA
123091958 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain