Gene : Thecc1EG038165 T. cacao v1.1
Defline:  (1 of 2) PTHR11062//PTHR11062:SF61 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // XYLOGALACTURONAN BETA-1,3-XYLOSYLTRANSFERASE Genomic Order:  1287
Name:  ? Thecc1EG038165 Secondary Identifier:  ? PAC:27427374
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5980 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG038165 0.5kb upstream 0.5kb upstream 3673 true scaffold_9: 7445281-7448953 Theobroma cacao
Thecc1EG038165 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7448454-7448953 Theobroma cacao
Thecc1EG038165 0.5kb downstream 0.5kb downstream 3673 true scaffold_9: 7444781-7448453 Theobroma cacao
Thecc1EG038165 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7444781-7445280 Theobroma cacao
Thecc1EG038165 1.0kb upstream 1.0kb upstream 4173 true scaffold_9: 7445281-7449453 Theobroma cacao
Thecc1EG038165 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7448454-7449453 Theobroma cacao
Thecc1EG038165 1.0kb downstream 1.0kb downstream 4173 true scaffold_9: 7444281-7448453 Theobroma cacao
Thecc1EG038165 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7444281-7445280 Theobroma cacao
Thecc1EG038165 2.0kb upstream 2.0kb upstream 5173 true scaffold_9: 7445281-7450453 Theobroma cacao
Thecc1EG038165 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7448454-7450453 Theobroma cacao
Thecc1EG038165 2.0kb downstream 2.0kb downstream 5173 true scaffold_9: 7443281-7448453 Theobroma cacao
Thecc1EG038165 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7443281-7445280 Theobroma cacao
Thecc1EG038165 5.0kb upstream 5.0kb upstream 8173 true scaffold_9: 7445281-7453453 Theobroma cacao
Thecc1EG038165 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7448454-7453453 Theobroma cacao
Thecc1EG038165 5.0kb downstream 5.0kb downstream 8173 true scaffold_9: 7440281-7448453 Theobroma cacao
Thecc1EG038165 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7440281-7445280 Theobroma cacao
Thecc1EG038165 10.0kb upstream 10.0kb upstream 13173 true scaffold_9: 7445281-7458453 Theobroma cacao
Thecc1EG038165 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7448454-7458453 Theobroma cacao
Thecc1EG038165 10.0kb downstream 10.0kb downstream 13173 true scaffold_9: 7435281-7448453 Theobroma cacao
Thecc1EG038165 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7435281-7445280 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123836868 5264 Brassicales-Malvales View MSA
124351163 5266 SBM View MSA
124252793 5268 Malvidae View MSA
124072198 5270 Rosid View MSA
123751032 5271 Pentapetalae View MSA
122797278 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain