Gene : Thecc1EG038394 T. cacao v1.1
Defline:  (1 of 1) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  1449
Name:  ? Thecc1EG038394 Secondary Identifier:  ? PAC:27430172
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1001 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG038394 0.5kb upstream 0.5kb upstream 8351 true scaffold_9: 8944495-8952845 Theobroma cacao
Thecc1EG038394 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8944495-8944994 Theobroma cacao
Thecc1EG038394 0.5kb downstream 0.5kb downstream 8351 true scaffold_9: 8944995-8953345 Theobroma cacao
Thecc1EG038394 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8952846-8953345 Theobroma cacao
Thecc1EG038394 1.0kb upstream 1.0kb upstream 8851 true scaffold_9: 8943995-8952845 Theobroma cacao
Thecc1EG038394 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8943995-8944994 Theobroma cacao
Thecc1EG038394 1.0kb downstream 1.0kb downstream 8851 true scaffold_9: 8944995-8953845 Theobroma cacao
Thecc1EG038394 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8952846-8953845 Theobroma cacao
Thecc1EG038394 2.0kb upstream 2.0kb upstream 9851 true scaffold_9: 8942995-8952845 Theobroma cacao
Thecc1EG038394 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8942995-8944994 Theobroma cacao
Thecc1EG038394 2.0kb downstream 2.0kb downstream 9851 true scaffold_9: 8944995-8954845 Theobroma cacao
Thecc1EG038394 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8952846-8954845 Theobroma cacao
Thecc1EG038394 5.0kb upstream 5.0kb upstream 12851 true scaffold_9: 8939995-8952845 Theobroma cacao
Thecc1EG038394 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8939995-8944994 Theobroma cacao
Thecc1EG038394 5.0kb downstream 5.0kb downstream 12851 true scaffold_9: 8944995-8957845 Theobroma cacao
Thecc1EG038394 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8952846-8957845 Theobroma cacao
Thecc1EG038394 10.0kb upstream 10.0kb upstream 17851 true scaffold_9: 8934995-8952845 Theobroma cacao
Thecc1EG038394 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8934995-8944994 Theobroma cacao
Thecc1EG038394 10.0kb downstream 10.0kb downstream 17851 true scaffold_9: 8944995-8962845 Theobroma cacao
Thecc1EG038394 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 8952846-8962845 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827599 5264 Brassicales-Malvales View MSA
124350218 5266 SBM View MSA
124240162 5268 Malvidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain