Gene : Thecc1EG038364 T. cacao v1.1
Defline:  (1 of 1) PTHR11624//PTHR11624:SF64 - DEHYDROGENASE RELATED // 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN Genomic Order:  1428
Name:  ? Thecc1EG038364 Secondary Identifier:  ? PAC:27430850
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7560 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG038364 0.5kb upstream 0.5kb upstream 6982 true scaffold_9: 8753065-8760046 Theobroma cacao
Thecc1EG038364 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8753065-8753564 Theobroma cacao
Thecc1EG038364 0.5kb downstream 0.5kb downstream 6982 true scaffold_9: 8753565-8760546 Theobroma cacao
Thecc1EG038364 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8760047-8760546 Theobroma cacao
Thecc1EG038364 1.0kb upstream 1.0kb upstream 7482 true scaffold_9: 8752565-8760046 Theobroma cacao
Thecc1EG038364 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8752565-8753564 Theobroma cacao
Thecc1EG038364 1.0kb downstream 1.0kb downstream 7482 true scaffold_9: 8753565-8761046 Theobroma cacao
Thecc1EG038364 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8760047-8761046 Theobroma cacao
Thecc1EG038364 2.0kb upstream 2.0kb upstream 8482 true scaffold_9: 8751565-8760046 Theobroma cacao
Thecc1EG038364 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8751565-8753564 Theobroma cacao
Thecc1EG038364 2.0kb downstream 2.0kb downstream 8482 true scaffold_9: 8753565-8762046 Theobroma cacao
Thecc1EG038364 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8760047-8762046 Theobroma cacao
Thecc1EG038364 5.0kb upstream 5.0kb upstream 11482 true scaffold_9: 8748565-8760046 Theobroma cacao
Thecc1EG038364 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8748565-8753564 Theobroma cacao
Thecc1EG038364 5.0kb downstream 5.0kb downstream 11482 true scaffold_9: 8753565-8765046 Theobroma cacao
Thecc1EG038364 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8760047-8765046 Theobroma cacao
Thecc1EG038364 10.0kb upstream 10.0kb upstream 16482 true scaffold_9: 8743565-8760046 Theobroma cacao
Thecc1EG038364 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8743565-8753564 Theobroma cacao
Thecc1EG038364 10.0kb downstream 10.0kb downstream 16482 true scaffold_9: 8753565-8770046 Theobroma cacao
Thecc1EG038364 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 8760047-8770046 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829072 5264 Brassicales-Malvales View MSA
124342617 5266 SBM View MSA
124239225 5268 Malvidae View MSA
124066019 5270 Rosid View MSA
123737503 5271 Pentapetalae View MSA
122791788 5272 Eudicot View MSA
122044949 5273 Angiosperm View MSA
121310367 5274 Embryophyte View MSA
123347869 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain