Gene : Thecc1EG038300 T. cacao v1.1
Defline:  (1 of 1) PTHR31407//PTHR31407:SF7 - FAMILY NOT NAMED // PSBP DOMAIN-CONTAINING PROTEIN 5, CHLOROPLASTIC Genomic Order:  1386
Name:  ? Thecc1EG038300 Secondary Identifier:  ? PAC:27429586
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PHOTOALL-PWY Theobroma cacao pathologic  
Tcacao PWY-101 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG038300 0.5kb upstream 0.5kb upstream 4621 true scaffold_9: 8344498-8349118 Theobroma cacao
Thecc1EG038300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8348619-8349118 Theobroma cacao
Thecc1EG038300 0.5kb downstream 0.5kb downstream 4621 true scaffold_9: 8343998-8348618 Theobroma cacao
Thecc1EG038300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8343998-8344497 Theobroma cacao
Thecc1EG038300 1.0kb upstream 1.0kb upstream 5121 true scaffold_9: 8344498-8349618 Theobroma cacao
Thecc1EG038300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8348619-8349618 Theobroma cacao
Thecc1EG038300 1.0kb downstream 1.0kb downstream 5121 true scaffold_9: 8343498-8348618 Theobroma cacao
Thecc1EG038300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8343498-8344497 Theobroma cacao
Thecc1EG038300 2.0kb upstream 2.0kb upstream 6121 true scaffold_9: 8344498-8350618 Theobroma cacao
Thecc1EG038300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8348619-8350618 Theobroma cacao
Thecc1EG038300 2.0kb downstream 2.0kb downstream 6121 true scaffold_9: 8342498-8348618 Theobroma cacao
Thecc1EG038300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8342498-8344497 Theobroma cacao
Thecc1EG038300 5.0kb upstream 5.0kb upstream 9121 true scaffold_9: 8344498-8353618 Theobroma cacao
Thecc1EG038300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8348619-8353618 Theobroma cacao
Thecc1EG038300 5.0kb downstream 5.0kb downstream 9121 true scaffold_9: 8339498-8348618 Theobroma cacao
Thecc1EG038300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8339498-8344497 Theobroma cacao
Thecc1EG038300 10.0kb upstream 10.0kb upstream 14121 true scaffold_9: 8344498-8358618 Theobroma cacao
Thecc1EG038300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8348619-8358618 Theobroma cacao
Thecc1EG038300 10.0kb downstream 10.0kb downstream 14121 true scaffold_9: 8334498-8348618 Theobroma cacao
Thecc1EG038300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 8334498-8344497 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830097 5264 Brassicales-Malvales View MSA
124339533 5266 SBM View MSA
124241336 5268 Malvidae View MSA
124062486 5270 Rosid View MSA
123736940 5271 Pentapetalae View MSA
122792817 5272 Eudicot View MSA
122045870 5273 Angiosperm View MSA
121347202 5274 Embryophyte View MSA
123425599 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain