Gene : Thecc1EG038835 T. cacao v1.1
Defline:  (1 of 1) PTHR10890//PTHR10890:SF10 - CYSTEINYL-TRNA SYNTHETASE // CYSTEINE-TRNA LIGASE Genomic Order:  1643
Name:  ? Thecc1EG038835 Secondary Identifier:  ? PAC:27429291
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG038835 0.5kb upstream 0.5kb upstream 6325 true scaffold_9: 13298406-13304730 Theobroma cacao
Thecc1EG038835 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 13304231-13304730 Theobroma cacao
Thecc1EG038835 0.5kb downstream 0.5kb downstream 6325 true scaffold_9: 13297906-13304230 Theobroma cacao
Thecc1EG038835 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 13297906-13298405 Theobroma cacao
Thecc1EG038835 1.0kb upstream 1.0kb upstream 6825 true scaffold_9: 13298406-13305230 Theobroma cacao
Thecc1EG038835 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 13304231-13305230 Theobroma cacao
Thecc1EG038835 1.0kb downstream 1.0kb downstream 6825 true scaffold_9: 13297406-13304230 Theobroma cacao
Thecc1EG038835 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 13297406-13298405 Theobroma cacao
Thecc1EG038835 2.0kb upstream 2.0kb upstream 7825 true scaffold_9: 13298406-13306230 Theobroma cacao
Thecc1EG038835 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 13304231-13306230 Theobroma cacao
Thecc1EG038835 2.0kb downstream 2.0kb downstream 7825 true scaffold_9: 13296406-13304230 Theobroma cacao
Thecc1EG038835 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 13296406-13298405 Theobroma cacao
Thecc1EG038835 5.0kb upstream 5.0kb upstream 10825 true scaffold_9: 13298406-13309230 Theobroma cacao
Thecc1EG038835 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 13304231-13309230 Theobroma cacao
Thecc1EG038835 5.0kb downstream 5.0kb downstream 10825 true scaffold_9: 13293406-13304230 Theobroma cacao
Thecc1EG038835 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 13293406-13298405 Theobroma cacao
Thecc1EG038835 10.0kb upstream 10.0kb upstream 15825 true scaffold_9: 13298406-13314230 Theobroma cacao
Thecc1EG038835 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 13304231-13314230 Theobroma cacao
Thecc1EG038835 10.0kb downstream 10.0kb downstream 15825 true scaffold_9: 13288406-13304230 Theobroma cacao
Thecc1EG038835 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 13288406-13298405 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830894 5264 Brassicales-Malvales View MSA
124340438 5266 SBM View MSA
124250049 5268 Malvidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain