Gene : Thecc1EG038478 T. cacao v1.1
Defline:  (1 of 1) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  1515
Name:  ? Thecc1EG038478 Secondary Identifier:  ? PAC:27428055
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao ANAEROFRUCAT-PWY Theobroma cacao pathologic  
Tcacao ANAGLYCOLYSIS-PWY Theobroma cacao pathologic  
Tcacao GLUCOSE1PMETAB-PWY Theobroma cacao pathologic  
Tcacao PWY-621 Theobroma cacao pathologic  
Tcacao PWY-7238 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG038478 0.5kb upstream 0.5kb upstream 6869 true scaffold_9: 9566190-9573058 Theobroma cacao
Thecc1EG038478 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 9566190-9566689 Theobroma cacao
Thecc1EG038478 0.5kb downstream 0.5kb downstream 6869 true scaffold_9: 9566690-9573558 Theobroma cacao
Thecc1EG038478 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 9573059-9573558 Theobroma cacao
Thecc1EG038478 1.0kb upstream 1.0kb upstream 7369 true scaffold_9: 9565690-9573058 Theobroma cacao
Thecc1EG038478 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 9565690-9566689 Theobroma cacao
Thecc1EG038478 1.0kb downstream 1.0kb downstream 7369 true scaffold_9: 9566690-9574058 Theobroma cacao
Thecc1EG038478 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 9573059-9574058 Theobroma cacao
Thecc1EG038478 2.0kb upstream 2.0kb upstream 8369 true scaffold_9: 9564690-9573058 Theobroma cacao
Thecc1EG038478 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 9564690-9566689 Theobroma cacao
Thecc1EG038478 2.0kb downstream 2.0kb downstream 8369 true scaffold_9: 9566690-9575058 Theobroma cacao
Thecc1EG038478 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 9573059-9575058 Theobroma cacao
Thecc1EG038478 5.0kb upstream 5.0kb upstream 11369 true scaffold_9: 9561690-9573058 Theobroma cacao
Thecc1EG038478 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 9561690-9566689 Theobroma cacao
Thecc1EG038478 5.0kb downstream 5.0kb downstream 11369 true scaffold_9: 9566690-9578058 Theobroma cacao
Thecc1EG038478 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 9573059-9578058 Theobroma cacao
Thecc1EG038478 10.0kb upstream 10.0kb upstream 16369 true scaffold_9: 9556690-9573058 Theobroma cacao
Thecc1EG038478 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 9556690-9566689 Theobroma cacao
Thecc1EG038478 10.0kb downstream 10.0kb downstream 16369 true scaffold_9: 9566690-9583058 Theobroma cacao
Thecc1EG038478 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 9573059-9583058 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830240 5264 Brassicales-Malvales View MSA
124346939 5266 SBM View MSA
124240736 5268 Malvidae View MSA
124061792 5270 Rosid View MSA
123752091 5271 Pentapetalae View MSA
122793026 5272 Eudicot View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain