Gene : Thecc1EG039322 T. cacao v1.1
Defline:  (1 of 1) PTHR11946//PTHR11946:SF5 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // VALYL-TRNA SYNTHETASE, ISOFORM A Genomic Order:  1804
Name:  ? Thecc1EG039322 Secondary Identifier:  ? PAC:27428218
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG039322 0.5kb upstream 0.5kb upstream 9624 true scaffold_9: 18164110-18173733 Theobroma cacao
Thecc1EG039322 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 18164110-18164609 Theobroma cacao
Thecc1EG039322 0.5kb downstream 0.5kb downstream 9624 true scaffold_9: 18164610-18174233 Theobroma cacao
Thecc1EG039322 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 18173734-18174233 Theobroma cacao
Thecc1EG039322 1.0kb upstream 1.0kb upstream 10124 true scaffold_9: 18163610-18173733 Theobroma cacao
Thecc1EG039322 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 18163610-18164609 Theobroma cacao
Thecc1EG039322 1.0kb downstream 1.0kb downstream 10124 true scaffold_9: 18164610-18174733 Theobroma cacao
Thecc1EG039322 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 18173734-18174733 Theobroma cacao
Thecc1EG039322 2.0kb upstream 2.0kb upstream 11124 true scaffold_9: 18162610-18173733 Theobroma cacao
Thecc1EG039322 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 18162610-18164609 Theobroma cacao
Thecc1EG039322 2.0kb downstream 2.0kb downstream 11124 true scaffold_9: 18164610-18175733 Theobroma cacao
Thecc1EG039322 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 18173734-18175733 Theobroma cacao
Thecc1EG039322 5.0kb upstream 5.0kb upstream 14124 true scaffold_9: 18159610-18173733 Theobroma cacao
Thecc1EG039322 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 18159610-18164609 Theobroma cacao
Thecc1EG039322 5.0kb downstream 5.0kb downstream 14124 true scaffold_9: 18164610-18178733 Theobroma cacao
Thecc1EG039322 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 18173734-18178733 Theobroma cacao
Thecc1EG039322 10.0kb upstream 10.0kb upstream 19124 true scaffold_9: 18154610-18173733 Theobroma cacao
Thecc1EG039322 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 18154610-18164609 Theobroma cacao
Thecc1EG039322 10.0kb downstream 10.0kb downstream 19124 true scaffold_9: 18164610-18183733 Theobroma cacao
Thecc1EG039322 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 18173734-18183733 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827608 5264 Brassicales-Malvales View MSA
124350639 5266 SBM View MSA
124237752 5268 Malvidae View MSA
124066992 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain