Gene : Thecc1EG039193 T. cacao v1.1
Defline:  (1 of 5) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  1751
Name:  ? Thecc1EG039193 Secondary Identifier:  ? PAC:27428637
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CALVIN-PWY Theobroma cacao pathologic  
Tcacao PHOTOALL-PWY Theobroma cacao pathologic  
Tcacao PWY-5723 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG039193 0.5kb upstream 0.5kb upstream 2554 true scaffold_9: 16831252-16833805 Theobroma cacao
Thecc1EG039193 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 16833306-16833805 Theobroma cacao
Thecc1EG039193 0.5kb downstream 0.5kb downstream 2554 true scaffold_9: 16830752-16833305 Theobroma cacao
Thecc1EG039193 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 16830752-16831251 Theobroma cacao
Thecc1EG039193 1.0kb upstream 1.0kb upstream 3054 true scaffold_9: 16831252-16834305 Theobroma cacao
Thecc1EG039193 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 16833306-16834305 Theobroma cacao
Thecc1EG039193 1.0kb downstream 1.0kb downstream 3054 true scaffold_9: 16830252-16833305 Theobroma cacao
Thecc1EG039193 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 16830252-16831251 Theobroma cacao
Thecc1EG039193 2.0kb upstream 2.0kb upstream 4054 true scaffold_9: 16831252-16835305 Theobroma cacao
Thecc1EG039193 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 16833306-16835305 Theobroma cacao
Thecc1EG039193 2.0kb downstream 2.0kb downstream 4054 true scaffold_9: 16829252-16833305 Theobroma cacao
Thecc1EG039193 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 16829252-16831251 Theobroma cacao
Thecc1EG039193 5.0kb upstream 5.0kb upstream 7054 true scaffold_9: 16831252-16838305 Theobroma cacao
Thecc1EG039193 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 16833306-16838305 Theobroma cacao
Thecc1EG039193 5.0kb downstream 5.0kb downstream 7054 true scaffold_9: 16826252-16833305 Theobroma cacao
Thecc1EG039193 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 16826252-16831251 Theobroma cacao
Thecc1EG039193 10.0kb upstream 10.0kb upstream 12054 true scaffold_9: 16831252-16843305 Theobroma cacao
Thecc1EG039193 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 16833306-16843305 Theobroma cacao
Thecc1EG039193 10.0kb downstream 10.0kb downstream 12054 true scaffold_9: 16821252-16833305 Theobroma cacao
Thecc1EG039193 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 16821252-16831251 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123822963 5264 Brassicales-Malvales Singleton cluster - no MSA
124351644 5266 SBM View MSA
124246487 5268 Malvidae View MSA
124070505 5270 Rosid View MSA
123742387 5271 Pentapetalae View MSA
122795056 5272 Eudicot View MSA
122048264 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain