Gene : Thecc1EG039151 T. cacao v1.1
Defline:  (1 of 8) K17710 - pentatricopeptide repeat domain-containing protein 1 (PTCD1) Genomic Order:  1738
Name:  ? Thecc1EG039151 Secondary Identifier:  ? PAC:27427447
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG039151 0.5kb upstream 0.5kb upstream 4150 true scaffold_9: 16470870-16475019 Theobroma cacao
Thecc1EG039151 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 16470870-16471369 Theobroma cacao
Thecc1EG039151 0.5kb downstream 0.5kb downstream 4150 true scaffold_9: 16471370-16475519 Theobroma cacao
Thecc1EG039151 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 16475020-16475519 Theobroma cacao
Thecc1EG039151 1.0kb upstream 1.0kb upstream 4650 true scaffold_9: 16470370-16475019 Theobroma cacao
Thecc1EG039151 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 16470370-16471369 Theobroma cacao
Thecc1EG039151 1.0kb downstream 1.0kb downstream 4650 true scaffold_9: 16471370-16476019 Theobroma cacao
Thecc1EG039151 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 16475020-16476019 Theobroma cacao
Thecc1EG039151 2.0kb upstream 2.0kb upstream 5650 true scaffold_9: 16469370-16475019 Theobroma cacao
Thecc1EG039151 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 16469370-16471369 Theobroma cacao
Thecc1EG039151 2.0kb downstream 2.0kb downstream 5650 true scaffold_9: 16471370-16477019 Theobroma cacao
Thecc1EG039151 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 16475020-16477019 Theobroma cacao
Thecc1EG039151 5.0kb upstream 5.0kb upstream 8650 true scaffold_9: 16466370-16475019 Theobroma cacao
Thecc1EG039151 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 16466370-16471369 Theobroma cacao
Thecc1EG039151 5.0kb downstream 5.0kb downstream 8650 true scaffold_9: 16471370-16480019 Theobroma cacao
Thecc1EG039151 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 16475020-16480019 Theobroma cacao
Thecc1EG039151 10.0kb upstream 10.0kb upstream 13650 true scaffold_9: 16461370-16475019 Theobroma cacao
Thecc1EG039151 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 16461370-16471369 Theobroma cacao
Thecc1EG039151 10.0kb downstream 10.0kb downstream 13650 true scaffold_9: 16471370-16485019 Theobroma cacao
Thecc1EG039151 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 16475020-16485019 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829466 5264 Brassicales-Malvales View MSA
124342808 5266 SBM View MSA
124238988 5268 Malvidae View MSA
124065938 5270 Rosid View MSA
123738887 5271 Pentapetalae View MSA
122785902 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain