Gene : Thecc1EG039159 T. cacao v1.1
Defline:  (1 of 1) K12115 - clock-associated PAS protein ZTL (ZTL) Genomic Order:  1741
Name:  ? Thecc1EG039159 Secondary Identifier:  ? PAC:27428971
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG039159 0.5kb upstream 0.5kb upstream 8008 true scaffold_9: 16540133-16548140 Theobroma cacao
Thecc1EG039159 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 16540133-16540632 Theobroma cacao
Thecc1EG039159 0.5kb downstream 0.5kb downstream 8008 true scaffold_9: 16540633-16548640 Theobroma cacao
Thecc1EG039159 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 16548141-16548640 Theobroma cacao
Thecc1EG039159 1.0kb upstream 1.0kb upstream 8508 true scaffold_9: 16539633-16548140 Theobroma cacao
Thecc1EG039159 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 16539633-16540632 Theobroma cacao
Thecc1EG039159 1.0kb downstream 1.0kb downstream 8508 true scaffold_9: 16540633-16549140 Theobroma cacao
Thecc1EG039159 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 16548141-16549140 Theobroma cacao
Thecc1EG039159 2.0kb upstream 2.0kb upstream 9508 true scaffold_9: 16538633-16548140 Theobroma cacao
Thecc1EG039159 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 16538633-16540632 Theobroma cacao
Thecc1EG039159 2.0kb downstream 2.0kb downstream 9508 true scaffold_9: 16540633-16550140 Theobroma cacao
Thecc1EG039159 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 16548141-16550140 Theobroma cacao
Thecc1EG039159 5.0kb upstream 5.0kb upstream 12508 true scaffold_9: 16535633-16548140 Theobroma cacao
Thecc1EG039159 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 16535633-16540632 Theobroma cacao
Thecc1EG039159 5.0kb downstream 5.0kb downstream 12508 true scaffold_9: 16540633-16553140 Theobroma cacao
Thecc1EG039159 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 16548141-16553140 Theobroma cacao
Thecc1EG039159 10.0kb upstream 10.0kb upstream 17508 true scaffold_9: 16530633-16548140 Theobroma cacao
Thecc1EG039159 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 16530633-16540632 Theobroma cacao
Thecc1EG039159 10.0kb downstream 10.0kb downstream 17508 true scaffold_9: 16540633-16558140 Theobroma cacao
Thecc1EG039159 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 16548141-16558140 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839573 5264 Brassicales-Malvales View MSA
124337655 5266 SBM View MSA
124242041 5268 Malvidae View MSA
124068680 5270 Rosid View MSA
123751990 5271 Pentapetalae View MSA
122789390 5272 Eudicot View MSA
122047758 5273 Angiosperm View MSA
121310788 5274 Embryophyte View MSA
123428379 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain