Gene : Thecc1EG039715 T. cacao v1.1
Defline:  (1 of 13) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  1945
Name:  ? Thecc1EG039715 Secondary Identifier:  ? PAC:27426979
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG039715 0.5kb upstream 0.5kb upstream 8222 true scaffold_9: 22296027-22304248 Theobroma cacao
Thecc1EG039715 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 22296027-22296526 Theobroma cacao
Thecc1EG039715 0.5kb downstream 0.5kb downstream 8222 true scaffold_9: 22296527-22304748 Theobroma cacao
Thecc1EG039715 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 22304249-22304748 Theobroma cacao
Thecc1EG039715 1.0kb upstream 1.0kb upstream 8722 true scaffold_9: 22295527-22304248 Theobroma cacao
Thecc1EG039715 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 22295527-22296526 Theobroma cacao
Thecc1EG039715 1.0kb downstream 1.0kb downstream 8722 true scaffold_9: 22296527-22305248 Theobroma cacao
Thecc1EG039715 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 22304249-22305248 Theobroma cacao
Thecc1EG039715 2.0kb upstream 2.0kb upstream 9722 true scaffold_9: 22294527-22304248 Theobroma cacao
Thecc1EG039715 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 22294527-22296526 Theobroma cacao
Thecc1EG039715 2.0kb downstream 2.0kb downstream 9722 true scaffold_9: 22296527-22306248 Theobroma cacao
Thecc1EG039715 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 22304249-22306248 Theobroma cacao
Thecc1EG039715 5.0kb upstream 5.0kb upstream 12722 true scaffold_9: 22291527-22304248 Theobroma cacao
Thecc1EG039715 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 22291527-22296526 Theobroma cacao
Thecc1EG039715 5.0kb downstream 5.0kb downstream 12722 true scaffold_9: 22296527-22309248 Theobroma cacao
Thecc1EG039715 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 22304249-22309248 Theobroma cacao
Thecc1EG039715 10.0kb upstream 10.0kb upstream 17722 true scaffold_9: 22286527-22304248 Theobroma cacao
Thecc1EG039715 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 22286527-22296526 Theobroma cacao
Thecc1EG039715 10.0kb downstream 10.0kb downstream 17722 true scaffold_9: 22296527-22314248 Theobroma cacao
Thecc1EG039715 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 22304249-22314248 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123825747 5264 Brassicales-Malvales View MSA
124349355 5266 SBM View MSA
124251074 5268 Malvidae View MSA
124073682 5270 Rosid View MSA
123741284 5271 Pentapetalae View MSA
122791344 5272 Eudicot View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain