Gene : Thecc1EG039542 T. cacao v1.1
Defline:  Gag-pol polyprotein Genomic Order:  1888
Name:  ? Thecc1EG039542 Secondary Identifier:  ? PAC:27429613
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG039542 0.5kb upstream 0.5kb upstream 2551 true scaffold_9: 20368270-20370820 Theobroma cacao
Thecc1EG039542 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 20370321-20370820 Theobroma cacao
Thecc1EG039542 0.5kb downstream 0.5kb downstream 2551 true scaffold_9: 20367770-20370320 Theobroma cacao
Thecc1EG039542 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 20367770-20368269 Theobroma cacao
Thecc1EG039542 1.0kb upstream 1.0kb upstream 3051 true scaffold_9: 20368270-20371320 Theobroma cacao
Thecc1EG039542 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 20370321-20371320 Theobroma cacao
Thecc1EG039542 1.0kb downstream 1.0kb downstream 3051 true scaffold_9: 20367270-20370320 Theobroma cacao
Thecc1EG039542 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 20367270-20368269 Theobroma cacao
Thecc1EG039542 2.0kb upstream 2.0kb upstream 4051 true scaffold_9: 20368270-20372320 Theobroma cacao
Thecc1EG039542 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 20370321-20372320 Theobroma cacao
Thecc1EG039542 2.0kb downstream 2.0kb downstream 4051 true scaffold_9: 20366270-20370320 Theobroma cacao
Thecc1EG039542 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 20366270-20368269 Theobroma cacao
Thecc1EG039542 5.0kb upstream 5.0kb upstream 7051 true scaffold_9: 20368270-20375320 Theobroma cacao
Thecc1EG039542 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 20370321-20375320 Theobroma cacao
Thecc1EG039542 5.0kb downstream 5.0kb downstream 7051 true scaffold_9: 20363270-20370320 Theobroma cacao
Thecc1EG039542 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 20363270-20368269 Theobroma cacao
Thecc1EG039542 10.0kb upstream 10.0kb upstream 12051 true scaffold_9: 20368270-20380320 Theobroma cacao
Thecc1EG039542 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 20370321-20380320 Theobroma cacao
Thecc1EG039542 10.0kb downstream 10.0kb downstream 12051 true scaffold_9: 20358270-20370320 Theobroma cacao
Thecc1EG039542 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 20358270-20368269 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827211 5264 Brassicales-Malvales View MSA
124321377 5266 SBM View MSA
124169004 5268 Malvidae View MSA
124051474 5270 Rosid View MSA
123753345 5271 Pentapetalae View MSA
122797917 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain