Gene : Thecc1EG040462 T. cacao v1.1
Defline:  (1 of 5) PTHR11771//PTHR11771:SF42 - LIPOXYGENASE // PROTEIN C13C4.7 Genomic Order:  2191
Name:  ? Thecc1EG040462 Secondary Identifier:  ? PAC:27429129
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5409 Theobroma cacao pathologic  
Tcacao PWY-5410 Theobroma cacao pathologic  
Tcacao PWY-735 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG040462 0.5kb upstream 0.5kb upstream 13630 true scaffold_9: 30486473-30500102 Theobroma cacao
Thecc1EG040462 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 30499603-30500102 Theobroma cacao
Thecc1EG040462 0.5kb downstream 0.5kb downstream 13630 true scaffold_9: 30485973-30499602 Theobroma cacao
Thecc1EG040462 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 30485973-30486472 Theobroma cacao
Thecc1EG040462 1.0kb upstream 1.0kb upstream 14130 true scaffold_9: 30486473-30500602 Theobroma cacao
Thecc1EG040462 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 30499603-30500602 Theobroma cacao
Thecc1EG040462 1.0kb downstream 1.0kb downstream 14130 true scaffold_9: 30485473-30499602 Theobroma cacao
Thecc1EG040462 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 30485473-30486472 Theobroma cacao
Thecc1EG040462 2.0kb upstream 2.0kb upstream 15130 true scaffold_9: 30486473-30501602 Theobroma cacao
Thecc1EG040462 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 30499603-30501602 Theobroma cacao
Thecc1EG040462 2.0kb downstream 2.0kb downstream 15130 true scaffold_9: 30484473-30499602 Theobroma cacao
Thecc1EG040462 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 30484473-30486472 Theobroma cacao
Thecc1EG040462 5.0kb upstream 5.0kb upstream 18130 true scaffold_9: 30486473-30504602 Theobroma cacao
Thecc1EG040462 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 30499603-30504602 Theobroma cacao
Thecc1EG040462 5.0kb downstream 5.0kb downstream 18130 true scaffold_9: 30481473-30499602 Theobroma cacao
Thecc1EG040462 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 30481473-30486472 Theobroma cacao
Thecc1EG040462 10.0kb upstream 10.0kb upstream 23130 true scaffold_9: 30486473-30509602 Theobroma cacao
Thecc1EG040462 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 30499603-30509602 Theobroma cacao
Thecc1EG040462 10.0kb downstream 10.0kb downstream 23130 true scaffold_9: 30476473-30499602 Theobroma cacao
Thecc1EG040462 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 30476473-30486472 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837104 5264 Brassicales-Malvales View MSA
124342225 5266 SBM View MSA
124251486 5268 Malvidae View MSA
124069762 5270 Rosid View MSA
123743667 5271 Pentapetalae View MSA
122789767 5272 Eudicot View MSA
122043119 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain