Gene : Thecc1EG040723 T. cacao v1.1
Defline:  (1 of 2) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Genomic Order:  2320
Name:  ? Thecc1EG040723 Secondary Identifier:  ? PAC:27430189
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG040723 0.5kb upstream 0.5kb upstream 1181 true scaffold_9: 32887584-32888764 Theobroma cacao
Thecc1EG040723 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 32888265-32888764 Theobroma cacao
Thecc1EG040723 0.5kb downstream 0.5kb downstream 1181 true scaffold_9: 32887084-32888264 Theobroma cacao
Thecc1EG040723 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 32887084-32887583 Theobroma cacao
Thecc1EG040723 1.0kb upstream 1.0kb upstream 1681 true scaffold_9: 32887584-32889264 Theobroma cacao
Thecc1EG040723 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 32888265-32889264 Theobroma cacao
Thecc1EG040723 1.0kb downstream 1.0kb downstream 1681 true scaffold_9: 32886584-32888264 Theobroma cacao
Thecc1EG040723 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 32886584-32887583 Theobroma cacao
Thecc1EG040723 2.0kb upstream 2.0kb upstream 2681 true scaffold_9: 32887584-32890264 Theobroma cacao
Thecc1EG040723 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 32888265-32890264 Theobroma cacao
Thecc1EG040723 2.0kb downstream 2.0kb downstream 2681 true scaffold_9: 32885584-32888264 Theobroma cacao
Thecc1EG040723 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 32885584-32887583 Theobroma cacao
Thecc1EG040723 5.0kb upstream 5.0kb upstream 5681 true scaffold_9: 32887584-32893264 Theobroma cacao
Thecc1EG040723 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 32888265-32893264 Theobroma cacao
Thecc1EG040723 5.0kb downstream 5.0kb downstream 5681 true scaffold_9: 32882584-32888264 Theobroma cacao
Thecc1EG040723 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 32882584-32887583 Theobroma cacao
Thecc1EG040723 10.0kb upstream 10.0kb upstream 10681 true scaffold_9: 32887584-32898264 Theobroma cacao
Thecc1EG040723 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 32888265-32898264 Theobroma cacao
Thecc1EG040723 10.0kb downstream 10.0kb downstream 10681 true scaffold_9: 32877584-32888264 Theobroma cacao
Thecc1EG040723 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 32877584-32887583 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840325 5264 Brassicales-Malvales View MSA
124349006 5266 SBM View MSA
124249733 5268 Malvidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain