Gene : Thecc1EG040868 T. cacao v1.1
Defline:  (1 of 1) PTHR10277//PTHR10277:SF40 - HOMOCITRATE SYNTHASE-RELATED // PROTEIN Y71G12B.10 Genomic Order:  2422
Name:  ? Thecc1EG040868 Secondary Identifier:  ? PAC:27429021
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao LEU-DEG2-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG040868 0.5kb upstream 0.5kb upstream 9136 true scaffold_9: 34053102-34062237 Theobroma cacao
Thecc1EG040868 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 34061738-34062237 Theobroma cacao
Thecc1EG040868 0.5kb downstream 0.5kb downstream 9136 true scaffold_9: 34052602-34061737 Theobroma cacao
Thecc1EG040868 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 34052602-34053101 Theobroma cacao
Thecc1EG040868 1.0kb upstream 1.0kb upstream 9636 true scaffold_9: 34053102-34062737 Theobroma cacao
Thecc1EG040868 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 34061738-34062737 Theobroma cacao
Thecc1EG040868 1.0kb downstream 1.0kb downstream 9636 true scaffold_9: 34052102-34061737 Theobroma cacao
Thecc1EG040868 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 34052102-34053101 Theobroma cacao
Thecc1EG040868 2.0kb upstream 2.0kb upstream 10636 true scaffold_9: 34053102-34063737 Theobroma cacao
Thecc1EG040868 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 34061738-34063737 Theobroma cacao
Thecc1EG040868 2.0kb downstream 2.0kb downstream 10636 true scaffold_9: 34051102-34061737 Theobroma cacao
Thecc1EG040868 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 34051102-34053101 Theobroma cacao
Thecc1EG040868 5.0kb upstream 5.0kb upstream 13636 true scaffold_9: 34053102-34066737 Theobroma cacao
Thecc1EG040868 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 34061738-34066737 Theobroma cacao
Thecc1EG040868 5.0kb downstream 5.0kb downstream 13636 true scaffold_9: 34048102-34061737 Theobroma cacao
Thecc1EG040868 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 34048102-34053101 Theobroma cacao
Thecc1EG040868 10.0kb upstream 10.0kb upstream 18636 true scaffold_9: 34053102-34071737 Theobroma cacao
Thecc1EG040868 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 34061738-34071737 Theobroma cacao
Thecc1EG040868 10.0kb downstream 10.0kb downstream 18636 true scaffold_9: 34043102-34061737 Theobroma cacao
Thecc1EG040868 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 34043102-34053101 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834510 5264 Brassicales-Malvales View MSA
124345181 5266 SBM View MSA
124245610 5268 Malvidae View MSA
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain