Gene : Thecc1EG041099 T. cacao v1.1
Defline:  (1 of 1) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  2571
Name:  ? Thecc1EG041099 Secondary Identifier:  ? PAC:27426918
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6689 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG041099 0.5kb upstream 0.5kb upstream 2168 true scaffold_9: 35465842-35468009 Theobroma cacao
Thecc1EG041099 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 35465842-35466341 Theobroma cacao
Thecc1EG041099 0.5kb downstream 0.5kb downstream 2168 true scaffold_9: 35466342-35468509 Theobroma cacao
Thecc1EG041099 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 35468010-35468509 Theobroma cacao
Thecc1EG041099 1.0kb upstream 1.0kb upstream 2668 true scaffold_9: 35465342-35468009 Theobroma cacao
Thecc1EG041099 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 35465342-35466341 Theobroma cacao
Thecc1EG041099 1.0kb downstream 1.0kb downstream 2668 true scaffold_9: 35466342-35469009 Theobroma cacao
Thecc1EG041099 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 35468010-35469009 Theobroma cacao
Thecc1EG041099 2.0kb upstream 2.0kb upstream 3668 true scaffold_9: 35464342-35468009 Theobroma cacao
Thecc1EG041099 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 35464342-35466341 Theobroma cacao
Thecc1EG041099 2.0kb downstream 2.0kb downstream 3668 true scaffold_9: 35466342-35470009 Theobroma cacao
Thecc1EG041099 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 35468010-35470009 Theobroma cacao
Thecc1EG041099 5.0kb upstream 5.0kb upstream 6668 true scaffold_9: 35461342-35468009 Theobroma cacao
Thecc1EG041099 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 35461342-35466341 Theobroma cacao
Thecc1EG041099 5.0kb downstream 5.0kb downstream 6668 true scaffold_9: 35466342-35473009 Theobroma cacao
Thecc1EG041099 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 35468010-35473009 Theobroma cacao
Thecc1EG041099 10.0kb upstream 10.0kb upstream 11668 true scaffold_9: 35456342-35468009 Theobroma cacao
Thecc1EG041099 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 35456342-35466341 Theobroma cacao
Thecc1EG041099 10.0kb downstream 10.0kb downstream 11668 true scaffold_9: 35466342-35478009 Theobroma cacao
Thecc1EG041099 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 35468010-35478009 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
123840604 5264 Brassicales-Malvales View MSA
124346911 5266 SBM View MSA
124240586 5268 Malvidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain