Gene : Thecc1EG041588 T. cacao v1.1
Defline:  (1 of 1) PTHR10003//PTHR10003:SF34 - SUPEROXIDE DISMUTASE CU-ZN -RELATED // SUPEROXIDE DISMUTASE [CU-ZN] 2, CHLOROPLASTIC Genomic Order:  2936
Name:  ? Thecc1EG041588 Secondary Identifier:  ? PAC:27427354
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao DETOX1-PWY Theobroma cacao pathologic  
Tcacao DETOX1-PWY-1 Theobroma cacao pathologic  
Tcacao PWY-6854 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG041588 0.5kb upstream 0.5kb upstream 3935 true scaffold_9: 38585479-38589413 Theobroma cacao
Thecc1EG041588 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 38588914-38589413 Theobroma cacao
Thecc1EG041588 0.5kb downstream 0.5kb downstream 3935 true scaffold_9: 38584979-38588913 Theobroma cacao
Thecc1EG041588 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 38584979-38585478 Theobroma cacao
Thecc1EG041588 1.0kb upstream 1.0kb upstream 4435 true scaffold_9: 38585479-38589913 Theobroma cacao
Thecc1EG041588 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 38588914-38589913 Theobroma cacao
Thecc1EG041588 1.0kb downstream 1.0kb downstream 4435 true scaffold_9: 38584479-38588913 Theobroma cacao
Thecc1EG041588 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 38584479-38585478 Theobroma cacao
Thecc1EG041588 2.0kb upstream 2.0kb upstream 5435 true scaffold_9: 38585479-38590913 Theobroma cacao
Thecc1EG041588 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 38588914-38590913 Theobroma cacao
Thecc1EG041588 2.0kb downstream 2.0kb downstream 5435 true scaffold_9: 38583479-38588913 Theobroma cacao
Thecc1EG041588 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 38583479-38585478 Theobroma cacao
Thecc1EG041588 5.0kb upstream 5.0kb upstream 8435 true scaffold_9: 38585479-38593913 Theobroma cacao
Thecc1EG041588 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 38588914-38593913 Theobroma cacao
Thecc1EG041588 5.0kb downstream 5.0kb downstream 8435 true scaffold_9: 38580479-38588913 Theobroma cacao
Thecc1EG041588 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 38580479-38585478 Theobroma cacao
Thecc1EG041588 10.0kb upstream 10.0kb upstream 13435 true scaffold_9: 38585479-38598913 Theobroma cacao
Thecc1EG041588 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 38588914-38598913 Theobroma cacao
Thecc1EG041588 10.0kb downstream 10.0kb downstream 13435 true scaffold_9: 38575479-38588913 Theobroma cacao
Thecc1EG041588 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 38575479-38585478 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837251 5264 Brassicales-Malvales View MSA
124340795 5266 SBM View MSA
124253159 5268 Malvidae View MSA
124067425 5270 Rosid View MSA
123737273 5271 Pentapetalae View MSA
122788875 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain