Gene : Thecc1EG042018 T. cacao v1.1
Defline:  (1 of 3) PTHR31852:SF0 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Genomic Order:  3316
Name:  ? Thecc1EG042018 Secondary Identifier:  ? PAC:27427832
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG042018 0.5kb upstream 0.5kb upstream 3193 true scaffold_9: 40613685-40616877 Theobroma cacao
Thecc1EG042018 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 40616378-40616877 Theobroma cacao
Thecc1EG042018 0.5kb downstream 0.5kb downstream 3193 true scaffold_9: 40613185-40616377 Theobroma cacao
Thecc1EG042018 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 40613185-40613684 Theobroma cacao
Thecc1EG042018 1.0kb upstream 1.0kb upstream 3693 true scaffold_9: 40613685-40617377 Theobroma cacao
Thecc1EG042018 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 40616378-40617377 Theobroma cacao
Thecc1EG042018 1.0kb downstream 1.0kb downstream 3693 true scaffold_9: 40612685-40616377 Theobroma cacao
Thecc1EG042018 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 40612685-40613684 Theobroma cacao
Thecc1EG042018 2.0kb upstream 2.0kb upstream 4693 true scaffold_9: 40613685-40618377 Theobroma cacao
Thecc1EG042018 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 40616378-40618377 Theobroma cacao
Thecc1EG042018 2.0kb downstream 2.0kb downstream 4693 true scaffold_9: 40611685-40616377 Theobroma cacao
Thecc1EG042018 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 40611685-40613684 Theobroma cacao
Thecc1EG042018 5.0kb upstream 5.0kb upstream 7693 true scaffold_9: 40613685-40621377 Theobroma cacao
Thecc1EG042018 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 40616378-40621377 Theobroma cacao
Thecc1EG042018 5.0kb downstream 5.0kb downstream 7693 true scaffold_9: 40608685-40616377 Theobroma cacao
Thecc1EG042018 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 40608685-40613684 Theobroma cacao
Thecc1EG042018 10.0kb upstream 10.0kb upstream 12693 true scaffold_9: 40613685-40626377 Theobroma cacao
Thecc1EG042018 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 40616378-40626377 Theobroma cacao
Thecc1EG042018 10.0kb downstream 10.0kb downstream 12693 true scaffold_9: 40603685-40616377 Theobroma cacao
Thecc1EG042018 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 40603685-40613684 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123835928 5264 Brassicales-Malvales View MSA
124343458 5266 SBM View MSA
124240139 5268 Malvidae View MSA
124061418 5270 Rosid View MSA
123742078 5271 Pentapetalae View MSA
122788444 5272 Eudicot View MSA
122042676 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain