Gene : Thecc1EG041913 T. cacao v1.1
Defline:  (1 of 1) PTHR21327//PTHR21327:SF7 - GTP CYCLOHYDROLASE II-RELATED // MONOFUNCTIONAL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA 3, CHLOROPLASTIC Genomic Order:  3231
Name:  ? Thecc1EG041913 Secondary Identifier:  ? PAC:27427116
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao RIBOSYN2-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG041913 0.5kb upstream 0.5kb upstream 4454 true scaffold_9: 40076949-40081402 Theobroma cacao
Thecc1EG041913 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 40080903-40081402 Theobroma cacao
Thecc1EG041913 0.5kb downstream 0.5kb downstream 4454 true scaffold_9: 40076449-40080902 Theobroma cacao
Thecc1EG041913 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 40076449-40076948 Theobroma cacao
Thecc1EG041913 1.0kb upstream 1.0kb upstream 4954 true scaffold_9: 40076949-40081902 Theobroma cacao
Thecc1EG041913 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 40080903-40081902 Theobroma cacao
Thecc1EG041913 1.0kb downstream 1.0kb downstream 4954 true scaffold_9: 40075949-40080902 Theobroma cacao
Thecc1EG041913 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 40075949-40076948 Theobroma cacao
Thecc1EG041913 2.0kb upstream 2.0kb upstream 5954 true scaffold_9: 40076949-40082902 Theobroma cacao
Thecc1EG041913 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 40080903-40082902 Theobroma cacao
Thecc1EG041913 2.0kb downstream 2.0kb downstream 5954 true scaffold_9: 40074949-40080902 Theobroma cacao
Thecc1EG041913 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 40074949-40076948 Theobroma cacao
Thecc1EG041913 5.0kb upstream 5.0kb upstream 8954 true scaffold_9: 40076949-40085902 Theobroma cacao
Thecc1EG041913 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 40080903-40085902 Theobroma cacao
Thecc1EG041913 5.0kb downstream 5.0kb downstream 8954 true scaffold_9: 40071949-40080902 Theobroma cacao
Thecc1EG041913 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 40071949-40076948 Theobroma cacao
Thecc1EG041913 10.0kb upstream 10.0kb upstream 13954 true scaffold_9: 40076949-40090902 Theobroma cacao
Thecc1EG041913 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 40080903-40090902 Theobroma cacao
Thecc1EG041913 10.0kb downstream 10.0kb downstream 13954 true scaffold_9: 40066949-40080902 Theobroma cacao
Thecc1EG041913 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 40066949-40076948 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830516 5264 Brassicales-Malvales View MSA
124342854 5266 SBM View MSA
124241994 5268 Malvidae View MSA
124062618 5270 Rosid View MSA
123745495 5271 Pentapetalae View MSA
122786383 5272 Eudicot View MSA
122046960 5273 Angiosperm View MSA
121310676 5274 Embryophyte View MSA
123348102 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain