Gene : Thecc1EG042251 T. cacao v1.1
Defline:  (1 of 1) PTHR31934:SF2 - RNA-DIRECTED DNA METHYLATION 4 Genomic Order:  3529
Name:  ? Thecc1EG042251 Secondary Identifier:  ? PAC:27425578
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG042251 0.5kb upstream 0.5kb upstream 4917 true scaffold_9: 41690400-41695316 Theobroma cacao
Thecc1EG042251 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 41694817-41695316 Theobroma cacao
Thecc1EG042251 0.5kb downstream 0.5kb downstream 4917 true scaffold_9: 41689900-41694816 Theobroma cacao
Thecc1EG042251 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 41689900-41690399 Theobroma cacao
Thecc1EG042251 1.0kb upstream 1.0kb upstream 5417 true scaffold_9: 41690400-41695816 Theobroma cacao
Thecc1EG042251 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 41694817-41695816 Theobroma cacao
Thecc1EG042251 1.0kb downstream 1.0kb downstream 5417 true scaffold_9: 41689400-41694816 Theobroma cacao
Thecc1EG042251 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 41689400-41690399 Theobroma cacao
Thecc1EG042251 2.0kb upstream 2.0kb upstream 6417 true scaffold_9: 41690400-41696816 Theobroma cacao
Thecc1EG042251 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 41694817-41696816 Theobroma cacao
Thecc1EG042251 2.0kb downstream 2.0kb downstream 6417 true scaffold_9: 41688400-41694816 Theobroma cacao
Thecc1EG042251 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 41688400-41690399 Theobroma cacao
Thecc1EG042251 5.0kb upstream 5.0kb upstream 9417 true scaffold_9: 41690400-41699816 Theobroma cacao
Thecc1EG042251 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 41694817-41699816 Theobroma cacao
Thecc1EG042251 5.0kb downstream 5.0kb downstream 9417 true scaffold_9: 41685400-41694816 Theobroma cacao
Thecc1EG042251 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 41685400-41690399 Theobroma cacao
Thecc1EG042251 10.0kb upstream 10.0kb upstream 14417 true scaffold_9: 41690400-41704816 Theobroma cacao
Thecc1EG042251 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 41694817-41704816 Theobroma cacao
Thecc1EG042251 10.0kb downstream 10.0kb downstream 14417 true scaffold_9: 41680400-41694816 Theobroma cacao
Thecc1EG042251 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 41680400-41690399 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123831966 5264 Brassicales-Malvales View MSA
124338280 5266 SBM View MSA
124244233 5268 Malvidae View MSA
124068776 5270 Rosid View MSA
123739864 5271 Pentapetalae View MSA
122793306 5272 Eudicot View MSA
122051086 5273 Angiosperm View MSA
121346551 5274 Embryophyte View MSA
123380403 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain