Gene : Thecc1EG046933 T. cacao v1.1
Defline:  (1 of 1) K14593 - capsanthin/capsorubin synthase (CCS1) Genomic Order:  2748
Name:  ? Thecc1EG046933 Secondary Identifier:  ? PAC:27431271
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6809 Theobroma cacao pathologic  
Tcacao PWY-695 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046933 0.5kb upstream 0.5kb upstream 2621 true scaffold_9: 37245072-37247692 Theobroma cacao
Thecc1EG046933 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 37247193-37247692 Theobroma cacao
Thecc1EG046933 0.5kb downstream 0.5kb downstream 2621 true scaffold_9: 37244572-37247192 Theobroma cacao
Thecc1EG046933 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 37244572-37245071 Theobroma cacao
Thecc1EG046933 1.0kb upstream 1.0kb upstream 3121 true scaffold_9: 37245072-37248192 Theobroma cacao
Thecc1EG046933 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 37247193-37248192 Theobroma cacao
Thecc1EG046933 1.0kb downstream 1.0kb downstream 3121 true scaffold_9: 37244072-37247192 Theobroma cacao
Thecc1EG046933 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 37244072-37245071 Theobroma cacao
Thecc1EG046933 2.0kb upstream 2.0kb upstream 4121 true scaffold_9: 37245072-37249192 Theobroma cacao
Thecc1EG046933 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 37247193-37249192 Theobroma cacao
Thecc1EG046933 2.0kb downstream 2.0kb downstream 4121 true scaffold_9: 37243072-37247192 Theobroma cacao
Thecc1EG046933 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 37243072-37245071 Theobroma cacao
Thecc1EG046933 5.0kb upstream 5.0kb upstream 7121 true scaffold_9: 37245072-37252192 Theobroma cacao
Thecc1EG046933 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 37247193-37252192 Theobroma cacao
Thecc1EG046933 5.0kb downstream 5.0kb downstream 7121 true scaffold_9: 37240072-37247192 Theobroma cacao
Thecc1EG046933 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 37240072-37245071 Theobroma cacao
Thecc1EG046933 10.0kb upstream 10.0kb upstream 12121 true scaffold_9: 37245072-37257192 Theobroma cacao
Thecc1EG046933 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 37247193-37257192 Theobroma cacao
Thecc1EG046933 10.0kb downstream 10.0kb downstream 12121 true scaffold_9: 37235072-37247192 Theobroma cacao
Thecc1EG046933 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 37235072-37245071 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123824309 5264 Brassicales-Malvales View MSA
124348925 5266 SBM View MSA
124246200 5268 Malvidae View MSA
124070716 5270 Rosid View MSA
123749598 5271 Pentapetalae View MSA
122795342 5272 Eudicot View MSA
122048987 5273 Angiosperm View MSA
121311196 5274 Embryophyte View MSA
123348524 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain