Gene : 29842.t000017 R. communis v0.1
Defline:  (1 of 7) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  17
Name:  ? 29842.t000017 Secondary Identifier:  ? PAC:16810653
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
29842.t000017 0.5kb upstream 0.5kb upstream 3705 true 29842: 103670-107374 Ricinus communis
29842.t000017 0.5kb upstream 0.5kb upstream 500 false 29842: 106875-107374 Ricinus communis
29842.t000017 0.5kb downstream 0.5kb downstream 3705 true 29842: 103170-106874 Ricinus communis
29842.t000017 0.5kb downstream 0.5kb downstream 500 false 29842: 103170-103669 Ricinus communis
29842.t000017 1.0kb upstream 1.0kb upstream 4205 true 29842: 103670-107874 Ricinus communis
29842.t000017 1.0kb upstream 1.0kb upstream 1000 false 29842: 106875-107874 Ricinus communis
29842.t000017 1.0kb downstream 1.0kb downstream 4205 true 29842: 102670-106874 Ricinus communis
29842.t000017 1.0kb downstream 1.0kb downstream 1000 false 29842: 102670-103669 Ricinus communis
29842.t000017 2.0kb upstream 2.0kb upstream 5205 true 29842: 103670-108874 Ricinus communis
29842.t000017 2.0kb upstream 2.0kb upstream 2000 false 29842: 106875-108874 Ricinus communis
29842.t000017 2.0kb downstream 2.0kb downstream 5205 true 29842: 101670-106874 Ricinus communis
29842.t000017 2.0kb downstream 2.0kb downstream 2000 false 29842: 101670-103669 Ricinus communis
29842.t000017 5.0kb upstream 5.0kb upstream 8205 true 29842: 103670-111874 Ricinus communis
29842.t000017 5.0kb upstream 5.0kb upstream 5000 false 29842: 106875-111874 Ricinus communis
29842.t000017 5.0kb downstream 5.0kb downstream 8205 true 29842: 98670-106874 Ricinus communis
29842.t000017 5.0kb downstream 5.0kb downstream 5000 false 29842: 98670-103669 Ricinus communis
29842.t000017 10.0kb upstream 10.0kb upstream 13205 true 29842: 103670-116874 Ricinus communis
29842.t000017 10.0kb upstream 10.0kb upstream 10000 false 29842: 106875-116874 Ricinus communis
29842.t000017 10.0kb downstream 10.0kb downstream 13205 true 29842: 93670-106874 Ricinus communis
29842.t000017 10.0kb downstream 10.0kb downstream 10000 false 29842: 93670-103669 Ricinus communis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122439623 5262 Malpighiales Singleton cluster - no MSA
124250408 5268 Malvidae View MSA
124074816 5270 Rosid View MSA
123749229 5271 Pentapetalae View MSA
122795391 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain