Gene : Sobic.008G113700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR37236:SF1 - AUXIN-BINDING PROTEIN 1 Genomic Order:  1204
Name:  ? Sobic.008G113700 Secondary Identifier:  ? PAC:37926101
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G113700 0.5kb upstream 0.5kb upstream 3156   true Chr08: 52196108-52199263 Sorghum bicolor
Sobic.008G113700 0.5kb upstream 0.5kb upstream 500   false Chr08: 52196108-52196607 Sorghum bicolor
Sobic.008G113700 0.5kb downstream 0.5kb downstream 3156   true Chr08: 52196608-52199763 Sorghum bicolor
Sobic.008G113700 0.5kb downstream 0.5kb downstream 500   false Chr08: 52199264-52199763 Sorghum bicolor
Sobic.008G113700 1.0kb upstream 1.0kb upstream 3656   true Chr08: 52195608-52199263 Sorghum bicolor
Sobic.008G113700 1.0kb upstream 1.0kb upstream 1000   false Chr08: 52195608-52196607 Sorghum bicolor
Sobic.008G113700 1.0kb downstream 1.0kb downstream 3656   true Chr08: 52196608-52200263 Sorghum bicolor
Sobic.008G113700 1.0kb downstream 1.0kb downstream 1000   false Chr08: 52199264-52200263 Sorghum bicolor
Sobic.008G113700 2.0kb upstream 2.0kb upstream 4656   true Chr08: 52194608-52199263 Sorghum bicolor
Sobic.008G113700 2.0kb upstream 2.0kb upstream 2000   false Chr08: 52194608-52196607 Sorghum bicolor
Sobic.008G113700 2.0kb downstream 2.0kb downstream 4656   true Chr08: 52196608-52201263 Sorghum bicolor
Sobic.008G113700 2.0kb downstream 2.0kb downstream 2000   false Chr08: 52199264-52201263 Sorghum bicolor
Sobic.008G113700 5.0kb upstream 5.0kb upstream 7656   true Chr08: 52191608-52199263 Sorghum bicolor
Sobic.008G113700 5.0kb upstream 5.0kb upstream 5000   false Chr08: 52191608-52196607 Sorghum bicolor
Sobic.008G113700 5.0kb downstream 5.0kb downstream 7656   true Chr08: 52196608-52204263 Sorghum bicolor
Sobic.008G113700 5.0kb downstream 5.0kb downstream 5000   false Chr08: 52199264-52204263 Sorghum bicolor
Sobic.008G113700 10.0kb upstream 10.0kb upstream 12656   true Chr08: 52186608-52199263 Sorghum bicolor
Sobic.008G113700 10.0kb upstream 10.0kb upstream 10000   false Chr08: 52186608-52196607 Sorghum bicolor
Sobic.008G113700 10.0kb downstream 10.0kb downstream 12656   true Chr08: 52196608-52209263 Sorghum bicolor
Sobic.008G113700 10.0kb downstream 10.0kb downstream 10000   false Chr08: 52199264-52209263 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184375 5267 Panicoideae View MSA
124586469 5269 Grass View MSA
122049427 5273 Angiosperm View MSA
121346924 5274 Embryophyte View MSA
123426893 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.033       High
cufflinks 0.167       Low
cufflinks 0.95        
cufflinks 2.433        
cufflinks 1.968        
cufflinks 1.034        
cufflinks 1.299        
cufflinks 0.353       Low
cufflinks 3.087       High
cufflinks 1.85        
cufflinks 1.605        
cufflinks 1.312        
cufflinks 0.652        
cufflinks 1.519        
cufflinks 2.207        
cufflinks 0.654        
cufflinks 1.124        
cufflinks 1.241        
cufflinks 0.531       Low
cufflinks 1.084        
cufflinks 3.158       High
cufflinks 1.758        
cufflinks 1.526        
cufflinks 1.76        
cufflinks 0.517       Low
cufflinks 0.169       Low
cufflinks 3.277       High
cufflinks 10.851     High High
cufflinks 1.311        
cufflinks 3.4       High

0 Strain