Gene : Sobic.008G123600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11349:SF44 - NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC Genomic Order:  1302
Name:  ? Sobic.008G123600 Secondary Identifier:  ? PAC:37927395
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Sequence Feature Displayer

Ontology Annotation Displayer

18 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-162 Sorghum bicolor pathologic  
Sbicolor PWY-6545 Sorghum bicolor pathologic  
Sbicolor PWY-7176 Sorghum bicolor pathologic  
Sbicolor PWY-7184 Sorghum bicolor pathologic  
Sbicolor PWY-7196 Sorghum bicolor pathologic  
Sbicolor PWY-7197 Sorghum bicolor pathologic  
Sbicolor PWY-7200 Sorghum bicolor pathologic  
Sbicolor PWY-7205 Sorghum bicolor pathologic  
Sbicolor PWY-7208 Sorghum bicolor pathologic  
Sbicolor PWY-7210 Sorghum bicolor pathologic  
Sbicolor PWY-7211 Sorghum bicolor pathologic  
Sbicolor PWY-7221 Sorghum bicolor pathologic  
Sbicolor PWY-7224 Sorghum bicolor pathologic  
Sbicolor PWY-7226 Sorghum bicolor pathologic  
Sbicolor PWY-7227 Sorghum bicolor pathologic  
Sbicolor PWY-7228 Sorghum bicolor pathologic  
Sbicolor PWY-7229 Sorghum bicolor pathologic  
Sbicolor PWY-841 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G123600 0.5kb upstream 0.5kb upstream 5553   true Chr08: 54648436-54653988 Sorghum bicolor
Sobic.008G123600 0.5kb upstream 0.5kb upstream 500   false Chr08: 54648436-54648935 Sorghum bicolor
Sobic.008G123600 0.5kb downstream 0.5kb downstream 5553   true Chr08: 54648936-54654488 Sorghum bicolor
Sobic.008G123600 0.5kb downstream 0.5kb downstream 500   false Chr08: 54653989-54654488 Sorghum bicolor
Sobic.008G123600 1.0kb upstream 1.0kb upstream 6053   true Chr08: 54647936-54653988 Sorghum bicolor
Sobic.008G123600 1.0kb upstream 1.0kb upstream 1000   false Chr08: 54647936-54648935 Sorghum bicolor
Sobic.008G123600 1.0kb downstream 1.0kb downstream 6053   true Chr08: 54648936-54654988 Sorghum bicolor
Sobic.008G123600 1.0kb downstream 1.0kb downstream 1000   false Chr08: 54653989-54654988 Sorghum bicolor
Sobic.008G123600 2.0kb upstream 2.0kb upstream 7053   true Chr08: 54646936-54653988 Sorghum bicolor
Sobic.008G123600 2.0kb upstream 2.0kb upstream 2000   false Chr08: 54646936-54648935 Sorghum bicolor
Sobic.008G123600 2.0kb downstream 2.0kb downstream 7053   true Chr08: 54648936-54655988 Sorghum bicolor
Sobic.008G123600 2.0kb downstream 2.0kb downstream 2000   false Chr08: 54653989-54655988 Sorghum bicolor
Sobic.008G123600 5.0kb upstream 5.0kb upstream 10053   true Chr08: 54643936-54653988 Sorghum bicolor
Sobic.008G123600 5.0kb upstream 5.0kb upstream 5000   false Chr08: 54643936-54648935 Sorghum bicolor
Sobic.008G123600 5.0kb downstream 5.0kb downstream 10053   true Chr08: 54648936-54658988 Sorghum bicolor
Sobic.008G123600 5.0kb downstream 5.0kb downstream 5000   false Chr08: 54653989-54658988 Sorghum bicolor
Sobic.008G123600 10.0kb upstream 10.0kb upstream 15053   true Chr08: 54638936-54653988 Sorghum bicolor
Sobic.008G123600 10.0kb upstream 10.0kb upstream 10000   false Chr08: 54638936-54648935 Sorghum bicolor
Sobic.008G123600 10.0kb downstream 10.0kb downstream 15053   true Chr08: 54648936-54663988 Sorghum bicolor
Sobic.008G123600 10.0kb downstream 10.0kb downstream 10000   false Chr08: 54653989-54663988 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195967 5267 Panicoideae View MSA
124571700 5269 Grass View MSA
122050213 5273 Angiosperm View MSA
123428962 5275 Viridiplantae View MSA
121346571 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.701        
cufflinks 2.903        
cufflinks 2.008        
cufflinks 1.733        
cufflinks 4.42        
cufflinks 2.232        
cufflinks 10.975       High
cufflinks 17.432     High High
cufflinks 1.362       Low
cufflinks 1.819        
cufflinks 2.716        
cufflinks 1.602        
cufflinks 1.961        
cufflinks 2.086        
cufflinks 3.04        
cufflinks 1.862        
cufflinks 12.792     High High
cufflinks 16.548     High High
cufflinks 1.372       Low
cufflinks 4.498        
cufflinks 3.752        
cufflinks 3.346        
cufflinks 2.269        
cufflinks 2.467        
cufflinks 0.462       Low
cufflinks 2.463        
cufflinks 2.296        
cufflinks 2.556        
cufflinks 42.262     High High
cufflinks 4.21        

0 Strain