Gene : Sobic.010G124600 S. bicolor v3.1.1
Defline:  (1 of 9) K10251 - 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase (HSD17B12, KAR, IFA38) Genomic Order:  1310
Name:  ? Sobic.010G124600 Secondary Identifier:  ? PAC:37911035
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5080 Sorghum bicolor pathologic  
Sbicolor PWY-6433 Sorghum bicolor pathologic  
Sbicolor PWY-6598 Sorghum bicolor pathologic  
Sbicolor PWY-7036 Sorghum bicolor pathologic  
Sbicolor PWY-7601 Sorghum bicolor pathologic  
Sbicolor PWY-7606 Sorghum bicolor pathologic  
Sbicolor PWY-7619 Sorghum bicolor pathologic  
Sbicolor PWY-7726 Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G124600 0.5kb upstream 0.5kb upstream 2689   true Chr10: 15179838-15182526 Sorghum bicolor
Sobic.010G124600 0.5kb upstream 0.5kb upstream 500   false Chr10: 15179838-15180337 Sorghum bicolor
Sobic.010G124600 0.5kb downstream 0.5kb downstream 2689   true Chr10: 15180338-15183026 Sorghum bicolor
Sobic.010G124600 0.5kb downstream 0.5kb downstream 500   false Chr10: 15182527-15183026 Sorghum bicolor
Sobic.010G124600 1.0kb upstream 1.0kb upstream 3189   true Chr10: 15179338-15182526 Sorghum bicolor
Sobic.010G124600 1.0kb upstream 1.0kb upstream 1000   false Chr10: 15179338-15180337 Sorghum bicolor
Sobic.010G124600 1.0kb downstream 1.0kb downstream 3189   true Chr10: 15180338-15183526 Sorghum bicolor
Sobic.010G124600 1.0kb downstream 1.0kb downstream 1000   false Chr10: 15182527-15183526 Sorghum bicolor
Sobic.010G124600 2.0kb upstream 2.0kb upstream 4189   true Chr10: 15178338-15182526 Sorghum bicolor
Sobic.010G124600 2.0kb upstream 2.0kb upstream 2000   false Chr10: 15178338-15180337 Sorghum bicolor
Sobic.010G124600 2.0kb downstream 2.0kb downstream 4189   true Chr10: 15180338-15184526 Sorghum bicolor
Sobic.010G124600 2.0kb downstream 2.0kb downstream 2000   false Chr10: 15182527-15184526 Sorghum bicolor
Sobic.010G124600 5.0kb upstream 5.0kb upstream 7189   true Chr10: 15175338-15182526 Sorghum bicolor
Sobic.010G124600 5.0kb upstream 5.0kb upstream 5000   false Chr10: 15175338-15180337 Sorghum bicolor
Sobic.010G124600 5.0kb downstream 5.0kb downstream 7189   true Chr10: 15180338-15187526 Sorghum bicolor
Sobic.010G124600 5.0kb downstream 5.0kb downstream 5000   false Chr10: 15182527-15187526 Sorghum bicolor
Sobic.010G124600 10.0kb upstream 10.0kb upstream 12189   true Chr10: 15170338-15182526 Sorghum bicolor
Sobic.010G124600 10.0kb upstream 10.0kb upstream 10000   false Chr10: 15170338-15180337 Sorghum bicolor
Sobic.010G124600 10.0kb downstream 10.0kb downstream 12189   true Chr10: 15180338-15192526 Sorghum bicolor
Sobic.010G124600 10.0kb downstream 10.0kb downstream 10000   false Chr10: 15182527-15192526 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995624 5273 Angiosperm View MSA
122198743 5267 Panicoideae View MSA
124589060 5269 Grass View MSA
123428985 5275 Viridiplantae View MSA
121265811 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.231        
cufflinks 0.007     Low Low
cufflinks 0.019     Low  
cufflinks 0.113        
cufflinks 0.021     Low  
cufflinks 0.249        
cufflinks 0.515       High
cufflinks 0.124        
cufflinks 0.048     Low  
cufflinks 0.059     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.083        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.422       High
cufflinks 0.023     Low  
cufflinks 0.576       High
cufflinks 0.485       High
cufflinks 0.137        
cufflinks 0.482       High
cufflinks 0.624       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low Low
cufflinks 0.005     Low Low
cufflinks 0.009     Low Low
cufflinks 0.021     Low  
cufflinks 0.273        
cufflinks 1.09       High

0 Strain