Gene : Sobic.010G121600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31573:SF1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2 Genomic Order:  1278
Name:  ? Sobic.010G121600 Secondary Identifier:  ? PAC:37911575
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G121600 0.5kb upstream 0.5kb upstream 4153   true Chr10: 14138828-14142980 Sorghum bicolor
Sobic.010G121600 0.5kb upstream 0.5kb upstream 500   false Chr10: 14142481-14142980 Sorghum bicolor
Sobic.010G121600 0.5kb downstream 0.5kb downstream 4153   true Chr10: 14138328-14142480 Sorghum bicolor
Sobic.010G121600 0.5kb downstream 0.5kb downstream 500   false Chr10: 14138328-14138827 Sorghum bicolor
Sobic.010G121600 1.0kb upstream 1.0kb upstream 4653   true Chr10: 14138828-14143480 Sorghum bicolor
Sobic.010G121600 1.0kb upstream 1.0kb upstream 1000   false Chr10: 14142481-14143480 Sorghum bicolor
Sobic.010G121600 1.0kb downstream 1.0kb downstream 4653   true Chr10: 14137828-14142480 Sorghum bicolor
Sobic.010G121600 1.0kb downstream 1.0kb downstream 1000   false Chr10: 14137828-14138827 Sorghum bicolor
Sobic.010G121600 2.0kb upstream 2.0kb upstream 5653   true Chr10: 14138828-14144480 Sorghum bicolor
Sobic.010G121600 2.0kb upstream 2.0kb upstream 2000   false Chr10: 14142481-14144480 Sorghum bicolor
Sobic.010G121600 2.0kb downstream 2.0kb downstream 5653   true Chr10: 14136828-14142480 Sorghum bicolor
Sobic.010G121600 2.0kb downstream 2.0kb downstream 2000   false Chr10: 14136828-14138827 Sorghum bicolor
Sobic.010G121600 5.0kb upstream 5.0kb upstream 8653   true Chr10: 14138828-14147480 Sorghum bicolor
Sobic.010G121600 5.0kb upstream 5.0kb upstream 5000   false Chr10: 14142481-14147480 Sorghum bicolor
Sobic.010G121600 5.0kb downstream 5.0kb downstream 8653   true Chr10: 14133828-14142480 Sorghum bicolor
Sobic.010G121600 5.0kb downstream 5.0kb downstream 5000   false Chr10: 14133828-14138827 Sorghum bicolor
Sobic.010G121600 10.0kb upstream 10.0kb upstream 13653   true Chr10: 14138828-14152480 Sorghum bicolor
Sobic.010G121600 10.0kb upstream 10.0kb upstream 10000   false Chr10: 14142481-14152480 Sorghum bicolor
Sobic.010G121600 10.0kb downstream 10.0kb downstream 13653   true Chr10: 14128828-14142480 Sorghum bicolor
Sobic.010G121600 10.0kb downstream 10.0kb downstream 10000   false Chr10: 14128828-14138827 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184722 5267 Panicoideae View MSA
124579907 5269 Grass View MSA
122048951 5273 Angiosperm View MSA
121351428 5274 Embryophyte View MSA
123423770 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.424       High
cufflinks 0.141       Low
cufflinks 0.418        
cufflinks 0.909        
cufflinks 0.933        
cufflinks 2.173       High
cufflinks 0.625        
cufflinks 0.318       Low
cufflinks 1.347       High
cufflinks 1.274        
cufflinks 0.505        
cufflinks 0.742        
cufflinks 1.052        
cufflinks 0.512        
cufflinks 1.14        
cufflinks 0.335       Low
cufflinks 0.742        
cufflinks 0.846        
cufflinks 0.35       Low
cufflinks 0.907        
cufflinks 2.132       High
cufflinks 0.607        
cufflinks 0.534        
cufflinks 0.685        
cufflinks 0.313       Low
cufflinks 0.119       Low
cufflinks 0.721        
cufflinks 2.241       High
cufflinks 0.626        
cufflinks 1.087        

0 Strain