Gene : Sobic.008G098300 S. bicolor v3.1.1
Defline:  (1 of 1) K11858 - ubiquitin carboxyl-terminal hydrolase 48 [EC:3.4.19.12] (USP48) Genomic Order:  1037
Name:  ? Sobic.008G098300 Secondary Identifier:  ? PAC:37928623
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G098300 0.5kb upstream 0.5kb upstream 18403   true Chr08: 46690628-46709030 Sorghum bicolor
Sobic.008G098300 0.5kb upstream 0.5kb upstream 500   false Chr08: 46690628-46691127 Sorghum bicolor
Sobic.008G098300 0.5kb downstream 0.5kb downstream 18403   true Chr08: 46691128-46709530 Sorghum bicolor
Sobic.008G098300 0.5kb downstream 0.5kb downstream 500   false Chr08: 46709031-46709530 Sorghum bicolor
Sobic.008G098300 1.0kb upstream 1.0kb upstream 18903   true Chr08: 46690128-46709030 Sorghum bicolor
Sobic.008G098300 1.0kb upstream 1.0kb upstream 1000   false Chr08: 46690128-46691127 Sorghum bicolor
Sobic.008G098300 1.0kb downstream 1.0kb downstream 18903   true Chr08: 46691128-46710030 Sorghum bicolor
Sobic.008G098300 1.0kb downstream 1.0kb downstream 1000   false Chr08: 46709031-46710030 Sorghum bicolor
Sobic.008G098300 2.0kb upstream 2.0kb upstream 19903   true Chr08: 46689128-46709030 Sorghum bicolor
Sobic.008G098300 2.0kb upstream 2.0kb upstream 2000   false Chr08: 46689128-46691127 Sorghum bicolor
Sobic.008G098300 2.0kb downstream 2.0kb downstream 19903   true Chr08: 46691128-46711030 Sorghum bicolor
Sobic.008G098300 2.0kb downstream 2.0kb downstream 2000   false Chr08: 46709031-46711030 Sorghum bicolor
Sobic.008G098300 5.0kb upstream 5.0kb upstream 22903   true Chr08: 46686128-46709030 Sorghum bicolor
Sobic.008G098300 5.0kb upstream 5.0kb upstream 5000   false Chr08: 46686128-46691127 Sorghum bicolor
Sobic.008G098300 5.0kb downstream 5.0kb downstream 22903   true Chr08: 46691128-46714030 Sorghum bicolor
Sobic.008G098300 5.0kb downstream 5.0kb downstream 5000   false Chr08: 46709031-46714030 Sorghum bicolor
Sobic.008G098300 10.0kb upstream 10.0kb upstream 27903   true Chr08: 46681128-46709030 Sorghum bicolor
Sobic.008G098300 10.0kb upstream 10.0kb upstream 10000   false Chr08: 46681128-46691127 Sorghum bicolor
Sobic.008G098300 10.0kb downstream 10.0kb downstream 27903   true Chr08: 46691128-46719030 Sorghum bicolor
Sobic.008G098300 10.0kb downstream 10.0kb downstream 10000   false Chr08: 46709031-46719030 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199963 5267 Panicoideae View MSA
124581112 5269 Grass View MSA
122043849 5273 Angiosperm View MSA
121347383 5274 Embryophyte View MSA
123427406 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.139       Low
cufflinks 1.478       Low
cufflinks 2.196        
cufflinks 2.308        
cufflinks 5.346       High
cufflinks 2.083        
cufflinks 2.839        
cufflinks 2.058        
cufflinks 4.725       High
cufflinks 4.735       High
cufflinks 3.212        
cufflinks 3.748        
cufflinks 4.243        
cufflinks 2.814        
cufflinks 3.429        
cufflinks 1.425       Low
cufflinks 2.48        
cufflinks 2.627        
cufflinks 2.081        
cufflinks 3.034        
cufflinks 7.56       High
cufflinks 2.621        
cufflinks 3.07        
cufflinks 3.163        
cufflinks 2.878        
cufflinks 1.657       Low
cufflinks 3.64        
cufflinks 1.301       Low
cufflinks 2.683        
cufflinks 4.409       High

0 Strain