Gene : Sobic.008G169400 S. bicolor v3.1.1
Defline:  (1 of 14) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  1773
Name:  ? Sobic.008G169400 Secondary Identifier:  ? PAC:37926960
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G169400 0.5kb upstream 0.5kb upstream 6385   true Chr08: 60367853-60374237 Sorghum bicolor
Sobic.008G169400 0.5kb upstream 0.5kb upstream 500   false Chr08: 60373738-60374237 Sorghum bicolor
Sobic.008G169400 0.5kb downstream 0.5kb downstream 6385   true Chr08: 60367353-60373737 Sorghum bicolor
Sobic.008G169400 0.5kb downstream 0.5kb downstream 500   false Chr08: 60367353-60367852 Sorghum bicolor
Sobic.008G169400 1.0kb upstream 1.0kb upstream 6885   true Chr08: 60367853-60374737 Sorghum bicolor
Sobic.008G169400 1.0kb upstream 1.0kb upstream 1000   false Chr08: 60373738-60374737 Sorghum bicolor
Sobic.008G169400 1.0kb downstream 1.0kb downstream 6885   true Chr08: 60366853-60373737 Sorghum bicolor
Sobic.008G169400 1.0kb downstream 1.0kb downstream 1000   false Chr08: 60366853-60367852 Sorghum bicolor
Sobic.008G169400 2.0kb upstream 2.0kb upstream 7885   true Chr08: 60367853-60375737 Sorghum bicolor
Sobic.008G169400 2.0kb upstream 2.0kb upstream 2000   false Chr08: 60373738-60375737 Sorghum bicolor
Sobic.008G169400 2.0kb downstream 2.0kb downstream 7885   true Chr08: 60365853-60373737 Sorghum bicolor
Sobic.008G169400 2.0kb downstream 2.0kb downstream 2000   false Chr08: 60365853-60367852 Sorghum bicolor
Sobic.008G169400 5.0kb upstream 5.0kb upstream 10885   true Chr08: 60367853-60378737 Sorghum bicolor
Sobic.008G169400 5.0kb upstream 5.0kb upstream 5000   false Chr08: 60373738-60378737 Sorghum bicolor
Sobic.008G169400 5.0kb downstream 5.0kb downstream 10885   true Chr08: 60362853-60373737 Sorghum bicolor
Sobic.008G169400 5.0kb downstream 5.0kb downstream 5000   false Chr08: 60362853-60367852 Sorghum bicolor
Sobic.008G169400 10.0kb upstream 10.0kb upstream 15885   true Chr08: 60367853-60383737 Sorghum bicolor
Sobic.008G169400 10.0kb upstream 10.0kb upstream 10000   false Chr08: 60373738-60383737 Sorghum bicolor
Sobic.008G169400 10.0kb downstream 10.0kb downstream 15885   true Chr08: 60357853-60373737 Sorghum bicolor
Sobic.008G169400 10.0kb downstream 10.0kb downstream 10000   false Chr08: 60357853-60367852 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176881 5267 Panicoideae View MSA
124573945 5269 Grass View MSA
122048595 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.576     High  
cufflinks 0.397       Low
cufflinks 1.369       Low
cufflinks 2.574       Low
cufflinks 121.956     High High
cufflinks 5.548        
cufflinks 30.384     High  
cufflinks 5.249        
cufflinks 32.805     High  
cufflinks 36.478     High  
cufflinks 12.94     High  
cufflinks 20.067     High  
cufflinks 40.841     High  
cufflinks 17.837     High  
cufflinks 27.972     High  
cufflinks 0.569       Low
cufflinks 27.174     High  
cufflinks 28.401     High  
cufflinks 2.607       Low
cufflinks 25.907     High  
cufflinks 145.689     High High
cufflinks 24.505     High  
cufflinks 23.008     High  
cufflinks 27.406     High  
cufflinks 0.523       Low
cufflinks 0.466       Low
cufflinks 8.834        
cufflinks 9.872     High  
cufflinks 10.933        
cufflinks 32.803     High  

0 Strain