Gene : Sobic.008G172700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22939//PTHR22939:SF76 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 5, CHLOROPLASTIC Genomic Order:  1804
Name:  ? Sobic.008G172700 Secondary Identifier:  ? PAC:37926707
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G172700 0.5kb upstream 0.5kb upstream 6029   true Chr08: 60628681-60634709 Sorghum bicolor
Sobic.008G172700 0.5kb upstream 0.5kb upstream 500   false Chr08: 60628681-60629180 Sorghum bicolor
Sobic.008G172700 0.5kb downstream 0.5kb downstream 6029   true Chr08: 60629181-60635209 Sorghum bicolor
Sobic.008G172700 0.5kb downstream 0.5kb downstream 500   false Chr08: 60634710-60635209 Sorghum bicolor
Sobic.008G172700 1.0kb upstream 1.0kb upstream 6529   true Chr08: 60628181-60634709 Sorghum bicolor
Sobic.008G172700 1.0kb upstream 1.0kb upstream 1000   false Chr08: 60628181-60629180 Sorghum bicolor
Sobic.008G172700 1.0kb downstream 1.0kb downstream 6529   true Chr08: 60629181-60635709 Sorghum bicolor
Sobic.008G172700 1.0kb downstream 1.0kb downstream 1000   false Chr08: 60634710-60635709 Sorghum bicolor
Sobic.008G172700 2.0kb upstream 2.0kb upstream 7529   true Chr08: 60627181-60634709 Sorghum bicolor
Sobic.008G172700 2.0kb upstream 2.0kb upstream 2000   false Chr08: 60627181-60629180 Sorghum bicolor
Sobic.008G172700 2.0kb downstream 2.0kb downstream 7529   true Chr08: 60629181-60636709 Sorghum bicolor
Sobic.008G172700 2.0kb downstream 2.0kb downstream 2000   false Chr08: 60634710-60636709 Sorghum bicolor
Sobic.008G172700 5.0kb upstream 5.0kb upstream 10529   true Chr08: 60624181-60634709 Sorghum bicolor
Sobic.008G172700 5.0kb upstream 5.0kb upstream 5000   false Chr08: 60624181-60629180 Sorghum bicolor
Sobic.008G172700 5.0kb downstream 5.0kb downstream 10529   true Chr08: 60629181-60639709 Sorghum bicolor
Sobic.008G172700 5.0kb downstream 5.0kb downstream 5000   false Chr08: 60634710-60639709 Sorghum bicolor
Sobic.008G172700 10.0kb upstream 10.0kb upstream 15529   true Chr08: 60619181-60634709 Sorghum bicolor
Sobic.008G172700 10.0kb upstream 10.0kb upstream 10000   false Chr08: 60619181-60629180 Sorghum bicolor
Sobic.008G172700 10.0kb downstream 10.0kb downstream 15529   true Chr08: 60629181-60644709 Sorghum bicolor
Sobic.008G172700 10.0kb downstream 10.0kb downstream 10000   false Chr08: 60634710-60644709 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178587 5267 Panicoideae View MSA
124570024 5269 Grass View MSA
122044835 5273 Angiosperm View MSA
121347205 5274 Embryophyte View MSA
123425899 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.146       Low
cufflinks 8.164     High High
cufflinks 2.133        
cufflinks 1.081        
cufflinks 0.753        
cufflinks 1.786        
cufflinks 2.273        
cufflinks 5.332       High
cufflinks 0.375        
cufflinks 0.377        
cufflinks 0.202        
cufflinks 0.235        
cufflinks 0.448        
cufflinks 0.159       Low
cufflinks 0.967        
cufflinks 3.426       High
cufflinks 2.189        
cufflinks 2.589        
cufflinks 1.926        
cufflinks 1.546        
cufflinks 1.628        
cufflinks 0.251        
cufflinks 0.162       Low
cufflinks 0.193        
cufflinks 3.142       High
cufflinks 5.735       High
cufflinks 0.133       Low
cufflinks 0.008     Low Low
cufflinks 4.075       High
cufflinks 0.947        

0 Strain