Gene : Sobic.008G183200 S. bicolor v3.1.1
Defline:  (1 of 12) KOG1546 - Metacaspase involved in regulation of apoptosis Genomic Order:  1921
Name:  ? Sobic.008G183200 Secondary Identifier:  ? PAC:37926440
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G183200 0.5kb upstream 0.5kb upstream 3450   true Chr08: 61670058-61673507 Sorghum bicolor
Sobic.008G183200 0.5kb upstream 0.5kb upstream 500   false Chr08: 61670058-61670557 Sorghum bicolor
Sobic.008G183200 0.5kb downstream 0.5kb downstream 3450   true Chr08: 61670558-61674007 Sorghum bicolor
Sobic.008G183200 0.5kb downstream 0.5kb downstream 500   false Chr08: 61673508-61674007 Sorghum bicolor
Sobic.008G183200 1.0kb upstream 1.0kb upstream 3950   true Chr08: 61669558-61673507 Sorghum bicolor
Sobic.008G183200 1.0kb upstream 1.0kb upstream 1000   false Chr08: 61669558-61670557 Sorghum bicolor
Sobic.008G183200 1.0kb downstream 1.0kb downstream 3950   true Chr08: 61670558-61674507 Sorghum bicolor
Sobic.008G183200 1.0kb downstream 1.0kb downstream 1000   false Chr08: 61673508-61674507 Sorghum bicolor
Sobic.008G183200 2.0kb upstream 2.0kb upstream 4950   true Chr08: 61668558-61673507 Sorghum bicolor
Sobic.008G183200 2.0kb upstream 2.0kb upstream 2000   false Chr08: 61668558-61670557 Sorghum bicolor
Sobic.008G183200 2.0kb downstream 2.0kb downstream 4950   true Chr08: 61670558-61675507 Sorghum bicolor
Sobic.008G183200 2.0kb downstream 2.0kb downstream 2000   false Chr08: 61673508-61675507 Sorghum bicolor
Sobic.008G183200 5.0kb upstream 5.0kb upstream 7950   true Chr08: 61665558-61673507 Sorghum bicolor
Sobic.008G183200 5.0kb upstream 5.0kb upstream 5000   false Chr08: 61665558-61670557 Sorghum bicolor
Sobic.008G183200 5.0kb downstream 5.0kb downstream 7950   true Chr08: 61670558-61678507 Sorghum bicolor
Sobic.008G183200 5.0kb downstream 5.0kb downstream 5000   false Chr08: 61673508-61678507 Sorghum bicolor
Sobic.008G183200 10.0kb upstream 10.0kb upstream 12950   true Chr08: 61660558-61673507 Sorghum bicolor
Sobic.008G183200 10.0kb upstream 10.0kb upstream 10000   false Chr08: 61660558-61670557 Sorghum bicolor
Sobic.008G183200 10.0kb downstream 10.0kb downstream 12950   true Chr08: 61670558-61683507 Sorghum bicolor
Sobic.008G183200 10.0kb downstream 10.0kb downstream 10000   false Chr08: 61673508-61683507 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027947 5273 Angiosperm View MSA
122200929 5267 Panicoideae View MSA
124468639 5269 Grass View MSA
123428899 5275 Viridiplantae View MSA
121350269 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.992       High
cufflinks 1.94        
cufflinks 2.233       High
cufflinks 0.019     Low Low
cufflinks 2.83       High
cufflinks 1.094        
cufflinks 1.238        
cufflinks 0.352        
cufflinks 0.419        
cufflinks 0.17        
cufflinks 0.409        
cufflinks 0.6        
cufflinks 0.14        
cufflinks 0.47        
cufflinks 3.029       High
cufflinks 0.894        
cufflinks 0.692        
cufflinks 2.133       High
cufflinks 0.776        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.138        
cufflinks 0.122        
cufflinks 0.149        
cufflinks 1.408        
cufflinks 1.997       High
cufflinks 0.149        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.525        
cufflinks 0.162        

0 Strain