Gene : Sobic.008G190700 S. bicolor v3.1.1
Defline:  (1 of 164) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1999
Name:  ? Sobic.008G190700 Secondary Identifier:  ? PAC:37926489
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G190700 0.5kb upstream 0.5kb upstream 6270   true Chr08: 62481733-62488002 Sorghum bicolor
Sobic.008G190700 0.5kb upstream 0.5kb upstream 500   false Chr08: 62487503-62488002 Sorghum bicolor
Sobic.008G190700 0.5kb downstream 0.5kb downstream 6270   true Chr08: 62481233-62487502 Sorghum bicolor
Sobic.008G190700 0.5kb downstream 0.5kb downstream 500   false Chr08: 62481233-62481732 Sorghum bicolor
Sobic.008G190700 1.0kb upstream 1.0kb upstream 6770   true Chr08: 62481733-62488502 Sorghum bicolor
Sobic.008G190700 1.0kb upstream 1.0kb upstream 1000   false Chr08: 62487503-62488502 Sorghum bicolor
Sobic.008G190700 1.0kb downstream 1.0kb downstream 6770   true Chr08: 62480733-62487502 Sorghum bicolor
Sobic.008G190700 1.0kb downstream 1.0kb downstream 1000   false Chr08: 62480733-62481732 Sorghum bicolor
Sobic.008G190700 2.0kb upstream 2.0kb upstream 7770   true Chr08: 62481733-62489502 Sorghum bicolor
Sobic.008G190700 2.0kb upstream 2.0kb upstream 2000   false Chr08: 62487503-62489502 Sorghum bicolor
Sobic.008G190700 2.0kb downstream 2.0kb downstream 7770   true Chr08: 62479733-62487502 Sorghum bicolor
Sobic.008G190700 2.0kb downstream 2.0kb downstream 2000   false Chr08: 62479733-62481732 Sorghum bicolor
Sobic.008G190700 5.0kb upstream 5.0kb upstream 10770   true Chr08: 62481733-62492502 Sorghum bicolor
Sobic.008G190700 5.0kb upstream 5.0kb upstream 5000   false Chr08: 62487503-62492502 Sorghum bicolor
Sobic.008G190700 5.0kb downstream 5.0kb downstream 10770   true Chr08: 62476733-62487502 Sorghum bicolor
Sobic.008G190700 5.0kb downstream 5.0kb downstream 5000   false Chr08: 62476733-62481732 Sorghum bicolor
Sobic.008G190700 10.0kb upstream 10.0kb upstream 15770   true Chr08: 62481733-62497502 Sorghum bicolor
Sobic.008G190700 10.0kb upstream 10.0kb upstream 10000   false Chr08: 62487503-62497502 Sorghum bicolor
Sobic.008G190700 10.0kb downstream 10.0kb downstream 15770   true Chr08: 62471733-62487502 Sorghum bicolor
Sobic.008G190700 10.0kb downstream 10.0kb downstream 10000   false Chr08: 62471733-62481732 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184777 5267 Panicoideae View MSA
124578300 5269 Grass View MSA
122042407 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.442     High  
cufflinks 5.208       Low
cufflinks 10.798     High  
cufflinks 10.713        
cufflinks 11.482        
cufflinks 5.678       Low
cufflinks 11.261        
cufflinks 5.07       Low
cufflinks 11.283        
cufflinks 14.206     High  
cufflinks 12.41     High  
cufflinks 17.521     High High
cufflinks 11.203        
cufflinks 13.485     High  
cufflinks 9.429        
cufflinks 7.618        
cufflinks 11.766     High  
cufflinks 10.788        
cufflinks 7.929        
cufflinks 13.97     High  
cufflinks 13.504        
cufflinks 10.173        
cufflinks 14.453     High  
cufflinks 14.586     High  
cufflinks 7.547        
cufflinks 4.736       Low
cufflinks 11.048        
cufflinks 0.81       Low
cufflinks 6.444        
cufflinks 11.366        

0 Strain