Gene : Sobic.010G221600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23089:SF3 - HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 Genomic Order:  2330
Name:  ? Sobic.010G221600 Secondary Identifier:  ? PAC:37908854
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G221600 0.5kb upstream 0.5kb upstream 3208   true Chr10: 56424900-56428107 Sorghum bicolor
Sobic.010G221600 0.5kb upstream 0.5kb upstream 500   false Chr10: 56424900-56425399 Sorghum bicolor
Sobic.010G221600 0.5kb downstream 0.5kb downstream 3208   true Chr10: 56425400-56428607 Sorghum bicolor
Sobic.010G221600 0.5kb downstream 0.5kb downstream 500   false Chr10: 56428108-56428607 Sorghum bicolor
Sobic.010G221600 1.0kb upstream 1.0kb upstream 3708   true Chr10: 56424400-56428107 Sorghum bicolor
Sobic.010G221600 1.0kb upstream 1.0kb upstream 1000   false Chr10: 56424400-56425399 Sorghum bicolor
Sobic.010G221600 1.0kb downstream 1.0kb downstream 3708   true Chr10: 56425400-56429107 Sorghum bicolor
Sobic.010G221600 1.0kb downstream 1.0kb downstream 1000   false Chr10: 56428108-56429107 Sorghum bicolor
Sobic.010G221600 2.0kb upstream 2.0kb upstream 4708   true Chr10: 56423400-56428107 Sorghum bicolor
Sobic.010G221600 2.0kb upstream 2.0kb upstream 2000   false Chr10: 56423400-56425399 Sorghum bicolor
Sobic.010G221600 2.0kb downstream 2.0kb downstream 4708   true Chr10: 56425400-56430107 Sorghum bicolor
Sobic.010G221600 2.0kb downstream 2.0kb downstream 2000   false Chr10: 56428108-56430107 Sorghum bicolor
Sobic.010G221600 5.0kb upstream 5.0kb upstream 7708   true Chr10: 56420400-56428107 Sorghum bicolor
Sobic.010G221600 5.0kb upstream 5.0kb upstream 5000   false Chr10: 56420400-56425399 Sorghum bicolor
Sobic.010G221600 5.0kb downstream 5.0kb downstream 7708   true Chr10: 56425400-56433107 Sorghum bicolor
Sobic.010G221600 5.0kb downstream 5.0kb downstream 5000   false Chr10: 56428108-56433107 Sorghum bicolor
Sobic.010G221600 10.0kb upstream 10.0kb upstream 12708   true Chr10: 56415400-56428107 Sorghum bicolor
Sobic.010G221600 10.0kb upstream 10.0kb upstream 10000   false Chr10: 56415400-56425399 Sorghum bicolor
Sobic.010G221600 10.0kb downstream 10.0kb downstream 12708   true Chr10: 56425400-56438107 Sorghum bicolor
Sobic.010G221600 10.0kb downstream 10.0kb downstream 10000   false Chr10: 56428108-56438107 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197072 5267 Panicoideae View MSA
124583814 5269 Grass View MSA
122042822 5273 Angiosperm View MSA
121347396 5274 Embryophyte View MSA
123425482 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.431       High
cufflinks 2.129       Low
cufflinks 3.309        
cufflinks 4.721        
cufflinks 1.808       Low
cufflinks 6.709       High
cufflinks 5.057        
cufflinks 5.439        
cufflinks 4.15        
cufflinks 3.529        
cufflinks 1.678       Low
cufflinks 1.951       Low
cufflinks 3.434        
cufflinks 2.808        
cufflinks 2.388        
cufflinks 2.689        
cufflinks 5.232        
cufflinks 6.447       High
cufflinks 5.352        
cufflinks 4.403        
cufflinks 2.319        
cufflinks 3.309        
cufflinks 2.653        
cufflinks 2.819        
cufflinks 1.878       Low
cufflinks 1.701       Low
cufflinks 2.527        
cufflinks 5.602        
cufflinks 12.086     High High
cufflinks 2.733        

0 Strain