Gene : Sobic.010G215500 S. bicolor v3.1.1
Defline:  (1 of 3) K17710 - pentatricopeptide repeat domain-containing protein 1 (PTCD1) Genomic Order:  2268
Name:  ? Sobic.010G215500 Secondary Identifier:  ? PAC:37911908
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G215500 0.5kb upstream 0.5kb upstream 4046   true Chr10: 55836241-55840286 Sorghum bicolor
Sobic.010G215500 0.5kb upstream 0.5kb upstream 500   false Chr10: 55836241-55836740 Sorghum bicolor
Sobic.010G215500 0.5kb downstream 0.5kb downstream 4046   true Chr10: 55836741-55840786 Sorghum bicolor
Sobic.010G215500 0.5kb downstream 0.5kb downstream 500   false Chr10: 55840287-55840786 Sorghum bicolor
Sobic.010G215500 1.0kb upstream 1.0kb upstream 4546   true Chr10: 55835741-55840286 Sorghum bicolor
Sobic.010G215500 1.0kb upstream 1.0kb upstream 1000   false Chr10: 55835741-55836740 Sorghum bicolor
Sobic.010G215500 1.0kb downstream 1.0kb downstream 4546   true Chr10: 55836741-55841286 Sorghum bicolor
Sobic.010G215500 1.0kb downstream 1.0kb downstream 1000   false Chr10: 55840287-55841286 Sorghum bicolor
Sobic.010G215500 2.0kb upstream 2.0kb upstream 5546   true Chr10: 55834741-55840286 Sorghum bicolor
Sobic.010G215500 2.0kb upstream 2.0kb upstream 2000   false Chr10: 55834741-55836740 Sorghum bicolor
Sobic.010G215500 2.0kb downstream 2.0kb downstream 5546   true Chr10: 55836741-55842286 Sorghum bicolor
Sobic.010G215500 2.0kb downstream 2.0kb downstream 2000   false Chr10: 55840287-55842286 Sorghum bicolor
Sobic.010G215500 5.0kb upstream 5.0kb upstream 8546   true Chr10: 55831741-55840286 Sorghum bicolor
Sobic.010G215500 5.0kb upstream 5.0kb upstream 5000   false Chr10: 55831741-55836740 Sorghum bicolor
Sobic.010G215500 5.0kb downstream 5.0kb downstream 8546   true Chr10: 55836741-55845286 Sorghum bicolor
Sobic.010G215500 5.0kb downstream 5.0kb downstream 5000   false Chr10: 55840287-55845286 Sorghum bicolor
Sobic.010G215500 10.0kb upstream 10.0kb upstream 13546   true Chr10: 55826741-55840286 Sorghum bicolor
Sobic.010G215500 10.0kb upstream 10.0kb upstream 10000   false Chr10: 55826741-55836740 Sorghum bicolor
Sobic.010G215500 10.0kb downstream 10.0kb downstream 13546   true Chr10: 55836741-55850286 Sorghum bicolor
Sobic.010G215500 10.0kb downstream 10.0kb downstream 10000   false Chr10: 55840287-55850286 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189319 5267 Panicoideae View MSA
124578933 5269 Grass View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.257        
cufflinks 2.087        
cufflinks 3.162        
cufflinks 2.562        
cufflinks 1.664        
cufflinks 3.06        
cufflinks 13.116     High High
cufflinks 23.08     High High
cufflinks 2.497        
cufflinks 2.739        
cufflinks 0.59       Low
cufflinks 1.398        
cufflinks 1.651        
cufflinks 0.912        
cufflinks 2.714        
cufflinks 3.722        
cufflinks 12.018     High High
cufflinks 12.088     High High
cufflinks 3.812        
cufflinks 5.907        
cufflinks 2.176        
cufflinks 0.73       Low
cufflinks 1.294        
cufflinks 1.301        
cufflinks 0.973        
cufflinks 3.445        
cufflinks 0.913        
cufflinks 0.949        
cufflinks 35.214     High High
cufflinks 3.095        

0 Strain