Gene : Sobic.010G204600 S. bicolor v3.1.1
Defline:  (1 of 1) K12197 - charged multivesicular body protein 1 (CHMP1, VPS46, DID2) Genomic Order:  2156
Name:  ? Sobic.010G204600 Secondary Identifier:  ? PAC:37909455
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G204600 0.5kb upstream 0.5kb upstream 3198   true Chr10: 54683198-54686395 Sorghum bicolor
Sobic.010G204600 0.5kb upstream 0.5kb upstream 500   false Chr10: 54683198-54683697 Sorghum bicolor
Sobic.010G204600 0.5kb downstream 0.5kb downstream 3198   true Chr10: 54683698-54686895 Sorghum bicolor
Sobic.010G204600 0.5kb downstream 0.5kb downstream 500   false Chr10: 54686396-54686895 Sorghum bicolor
Sobic.010G204600 1.0kb upstream 1.0kb upstream 3698   true Chr10: 54682698-54686395 Sorghum bicolor
Sobic.010G204600 1.0kb upstream 1.0kb upstream 1000   false Chr10: 54682698-54683697 Sorghum bicolor
Sobic.010G204600 1.0kb downstream 1.0kb downstream 3698   true Chr10: 54683698-54687395 Sorghum bicolor
Sobic.010G204600 1.0kb downstream 1.0kb downstream 1000   false Chr10: 54686396-54687395 Sorghum bicolor
Sobic.010G204600 2.0kb upstream 2.0kb upstream 4698   true Chr10: 54681698-54686395 Sorghum bicolor
Sobic.010G204600 2.0kb upstream 2.0kb upstream 2000   false Chr10: 54681698-54683697 Sorghum bicolor
Sobic.010G204600 2.0kb downstream 2.0kb downstream 4698   true Chr10: 54683698-54688395 Sorghum bicolor
Sobic.010G204600 2.0kb downstream 2.0kb downstream 2000   false Chr10: 54686396-54688395 Sorghum bicolor
Sobic.010G204600 5.0kb upstream 5.0kb upstream 7698   true Chr10: 54678698-54686395 Sorghum bicolor
Sobic.010G204600 5.0kb upstream 5.0kb upstream 5000   false Chr10: 54678698-54683697 Sorghum bicolor
Sobic.010G204600 5.0kb downstream 5.0kb downstream 7698   true Chr10: 54683698-54691395 Sorghum bicolor
Sobic.010G204600 5.0kb downstream 5.0kb downstream 5000   false Chr10: 54686396-54691395 Sorghum bicolor
Sobic.010G204600 10.0kb upstream 10.0kb upstream 12698   true Chr10: 54673698-54686395 Sorghum bicolor
Sobic.010G204600 10.0kb upstream 10.0kb upstream 10000   false Chr10: 54673698-54683697 Sorghum bicolor
Sobic.010G204600 10.0kb downstream 10.0kb downstream 12698   true Chr10: 54683698-54696395 Sorghum bicolor
Sobic.010G204600 10.0kb downstream 10.0kb downstream 10000   false Chr10: 54686396-54696395 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178383 5267 Panicoideae View MSA
124580492 5269 Grass View MSA
122044262 5273 Angiosperm View MSA
121349635 5274 Embryophyte View MSA
123427092 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.243     High  
cufflinks 24.101     High  
cufflinks 84.557     High High
cufflinks 94.075     High High
cufflinks 39.924     High  
cufflinks 31.253     High  
cufflinks 19.527     High Low
cufflinks 19.523     High Low
cufflinks 37.504     High  
cufflinks 37.925     High  
cufflinks 42.235     High  
cufflinks 30.161     High  
cufflinks 37.831     High  
cufflinks 25.958     High  
cufflinks 59.383     High High
cufflinks 27.635     High  
cufflinks 18.641     High Low
cufflinks 18.433     High Low
cufflinks 52.338     High High
cufflinks 26.686     High  
cufflinks 19.713     High Low
cufflinks 24.781     High  
cufflinks 23.134     High  
cufflinks 20.503     High  
cufflinks 39.733     High  
cufflinks 17.997     High Low
cufflinks 69.899     High High
cufflinks 39.596     High  
cufflinks 15.91     High Low
cufflinks 62.512     High High

0 Strain