Gene : Sobic.010G253300 S. bicolor v3.1.1
Defline:  (1 of 14) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  2666
Name:  ? Sobic.010G253300 Secondary Identifier:  ? PAC:37908578
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G253300 0.5kb upstream 0.5kb upstream 8545   true Chr10: 59219448-59227992 Sorghum bicolor
Sobic.010G253300 0.5kb upstream 0.5kb upstream 500   false Chr10: 59219448-59219947 Sorghum bicolor
Sobic.010G253300 0.5kb downstream 0.5kb downstream 8545   true Chr10: 59219948-59228492 Sorghum bicolor
Sobic.010G253300 0.5kb downstream 0.5kb downstream 500   false Chr10: 59227993-59228492 Sorghum bicolor
Sobic.010G253300 1.0kb upstream 1.0kb upstream 9045   true Chr10: 59218948-59227992 Sorghum bicolor
Sobic.010G253300 1.0kb upstream 1.0kb upstream 1000   false Chr10: 59218948-59219947 Sorghum bicolor
Sobic.010G253300 1.0kb downstream 1.0kb downstream 9045   true Chr10: 59219948-59228992 Sorghum bicolor
Sobic.010G253300 1.0kb downstream 1.0kb downstream 1000   false Chr10: 59227993-59228992 Sorghum bicolor
Sobic.010G253300 2.0kb upstream 2.0kb upstream 10045   true Chr10: 59217948-59227992 Sorghum bicolor
Sobic.010G253300 2.0kb upstream 2.0kb upstream 2000   false Chr10: 59217948-59219947 Sorghum bicolor
Sobic.010G253300 2.0kb downstream 2.0kb downstream 10045   true Chr10: 59219948-59229992 Sorghum bicolor
Sobic.010G253300 2.0kb downstream 2.0kb downstream 2000   false Chr10: 59227993-59229992 Sorghum bicolor
Sobic.010G253300 5.0kb upstream 5.0kb upstream 13045   true Chr10: 59214948-59227992 Sorghum bicolor
Sobic.010G253300 5.0kb upstream 5.0kb upstream 5000   false Chr10: 59214948-59219947 Sorghum bicolor
Sobic.010G253300 5.0kb downstream 5.0kb downstream 13045   true Chr10: 59219948-59232992 Sorghum bicolor
Sobic.010G253300 5.0kb downstream 5.0kb downstream 5000   false Chr10: 59227993-59232992 Sorghum bicolor
Sobic.010G253300 10.0kb upstream 10.0kb upstream 18045   true Chr10: 59209948-59227992 Sorghum bicolor
Sobic.010G253300 10.0kb upstream 10.0kb upstream 10000   false Chr10: 59209948-59219947 Sorghum bicolor
Sobic.010G253300 10.0kb downstream 10.0kb downstream 18045   true Chr10: 59219948-59237992 Sorghum bicolor
Sobic.010G253300 10.0kb downstream 10.0kb downstream 10000   false Chr10: 59227993-59237992 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177956 5267 Panicoideae View MSA
124578667 5269 Grass View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.562        
cufflinks 2.143        
cufflinks 3.216        
cufflinks 2.25        
cufflinks 6.46        
cufflinks 3.541        
cufflinks 2.183        
cufflinks 2.433        
cufflinks 9.997        
cufflinks 9.802        
cufflinks 13.058     High  
cufflinks 10.073        
cufflinks 5.375        
cufflinks 10.087        
cufflinks 6.39        
cufflinks 1.374       Low
cufflinks 1.734        
cufflinks 1.753        
cufflinks 13.707     High High
cufflinks 2.369        
cufflinks 7.727        
cufflinks 9.502        
cufflinks 9.249        
cufflinks 10.162        
cufflinks 3.842        
cufflinks 2.738        
cufflinks 7.221        
cufflinks 0.042     Low Low
cufflinks 3.279        
cufflinks 4.228        

0 Strain