Gene : Sobic.010G275150 S. bicolor v3.1.1
Defline:  (1 of 1) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  2895
Name:  ? Sobic.010G275150 Secondary Identifier:  ? PAC:37911129
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6689 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G275150 0.5kb upstream 0.5kb upstream 2381   true Chr10: 60831090-60833470 Sorghum bicolor
Sobic.010G275150 0.5kb upstream 0.5kb upstream 500   false Chr10: 60832971-60833470 Sorghum bicolor
Sobic.010G275150 0.5kb downstream 0.5kb downstream 2381   true Chr10: 60830590-60832970 Sorghum bicolor
Sobic.010G275150 0.5kb downstream 0.5kb downstream 500   false Chr10: 60830590-60831089 Sorghum bicolor
Sobic.010G275150 1.0kb upstream 1.0kb upstream 2881   true Chr10: 60831090-60833970 Sorghum bicolor
Sobic.010G275150 1.0kb upstream 1.0kb upstream 1000   false Chr10: 60832971-60833970 Sorghum bicolor
Sobic.010G275150 1.0kb downstream 1.0kb downstream 2881   true Chr10: 60830090-60832970 Sorghum bicolor
Sobic.010G275150 1.0kb downstream 1.0kb downstream 1000   false Chr10: 60830090-60831089 Sorghum bicolor
Sobic.010G275150 2.0kb upstream 2.0kb upstream 3881   true Chr10: 60831090-60834970 Sorghum bicolor
Sobic.010G275150 2.0kb upstream 2.0kb upstream 2000   false Chr10: 60832971-60834970 Sorghum bicolor
Sobic.010G275150 2.0kb downstream 2.0kb downstream 3881   true Chr10: 60829090-60832970 Sorghum bicolor
Sobic.010G275150 2.0kb downstream 2.0kb downstream 2000   false Chr10: 60829090-60831089 Sorghum bicolor
Sobic.010G275150 5.0kb upstream 5.0kb upstream 6881   true Chr10: 60831090-60837970 Sorghum bicolor
Sobic.010G275150 5.0kb upstream 5.0kb upstream 5000   false Chr10: 60832971-60837970 Sorghum bicolor
Sobic.010G275150 5.0kb downstream 5.0kb downstream 6881   true Chr10: 60826090-60832970 Sorghum bicolor
Sobic.010G275150 5.0kb downstream 5.0kb downstream 5000   false Chr10: 60826090-60831089 Sorghum bicolor
Sobic.010G275150 10.0kb upstream 10.0kb upstream 11881   true Chr10: 60831090-60842970 Sorghum bicolor
Sobic.010G275150 10.0kb upstream 10.0kb upstream 10000   false Chr10: 60832971-60842970 Sorghum bicolor
Sobic.010G275150 10.0kb downstream 10.0kb downstream 11881   true Chr10: 60821090-60832970 Sorghum bicolor
Sobic.010G275150 10.0kb downstream 10.0kb downstream 10000   false Chr10: 60821090-60831089 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122175925 5267 Panicoideae View MSA
124584479 5269 Grass View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.57       High
cufflinks 0.519       Low
cufflinks 1.088        
cufflinks 2.682        
cufflinks 1.808        
cufflinks 3.143       High
cufflinks 1.405        
cufflinks 0.628       Low
cufflinks 2.565        
cufflinks 2.486        
cufflinks 1.521        
cufflinks 2.04        
cufflinks 1.455        
cufflinks 1.808        
cufflinks 1.708        
cufflinks 1.887        
cufflinks 1.371        
cufflinks 1.535        
cufflinks 1.565        
cufflinks 1.729        
cufflinks 4.086       High
cufflinks 1.518        
cufflinks 1.528        
cufflinks 1.848        
cufflinks 0.981        
cufflinks 0.425       Low
cufflinks 1.853        
cufflinks 3.205       High
cufflinks 0.983        
cufflinks 2.053        

0 Strain