Gene : Sobic.003G005400 S. bicolor v3.1.1
Defline:  (1 of 57) 3.1.1.11 - Pectinesterase / Pectin methylesterase Genomic Order:  55
Name:  ? Sobic.003G005400 Secondary Identifier:  ? PAC:37915751
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-1081 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G005400 0.5kb upstream 0.5kb upstream 2288 true Chr03: 469817-472104 Sorghum bicolor
Sobic.003G005400 0.5kb upstream 0.5kb upstream 500 false Chr03: 471605-472104 Sorghum bicolor
Sobic.003G005400 0.5kb downstream 0.5kb downstream 2288 true Chr03: 469317-471604 Sorghum bicolor
Sobic.003G005400 0.5kb downstream 0.5kb downstream 500 false Chr03: 469317-469816 Sorghum bicolor
Sobic.003G005400 1.0kb upstream 1.0kb upstream 2788 true Chr03: 469817-472604 Sorghum bicolor
Sobic.003G005400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 471605-472604 Sorghum bicolor
Sobic.003G005400 1.0kb downstream 1.0kb downstream 2788 true Chr03: 468817-471604 Sorghum bicolor
Sobic.003G005400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 468817-469816 Sorghum bicolor
Sobic.003G005400 2.0kb upstream 2.0kb upstream 3788 true Chr03: 469817-473604 Sorghum bicolor
Sobic.003G005400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 471605-473604 Sorghum bicolor
Sobic.003G005400 2.0kb downstream 2.0kb downstream 3788 true Chr03: 467817-471604 Sorghum bicolor
Sobic.003G005400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 467817-469816 Sorghum bicolor
Sobic.003G005400 5.0kb upstream 5.0kb upstream 6788 true Chr03: 469817-476604 Sorghum bicolor
Sobic.003G005400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 471605-476604 Sorghum bicolor
Sobic.003G005400 5.0kb downstream 5.0kb downstream 6788 true Chr03: 464817-471604 Sorghum bicolor
Sobic.003G005400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 464817-469816 Sorghum bicolor
Sobic.003G005400 10.0kb upstream 10.0kb upstream 11788 true Chr03: 469817-481604 Sorghum bicolor
Sobic.003G005400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 471605-481604 Sorghum bicolor
Sobic.003G005400 10.0kb downstream 10.0kb downstream 11788 true Chr03: 459817-471604 Sorghum bicolor
Sobic.003G005400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 459817-469816 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197125 5267 Panicoideae View MSA
124584679 5269 Grass View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain