Gene : Sobic.003G018000 S. bicolor v3.1.1

Defline:  (1 of 1) PTHR33388:SF1 - F1K23.3 Genomic Order:  190
Name:  ? Sobic.003G018000 Secondary Identifier:  ? PAC:37915848

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G018000 0.5kb upstream 0.5kb upstream 3819 true Chr03: 1595535-1599353 Sorghum bicolor
Sobic.003G018000 0.5kb upstream 0.5kb upstream 500 false Chr03: 1598854-1599353 Sorghum bicolor
Sobic.003G018000 0.5kb downstream 0.5kb downstream 3819 true Chr03: 1595035-1598853 Sorghum bicolor
Sobic.003G018000 0.5kb downstream 0.5kb downstream 500 false Chr03: 1595035-1595534 Sorghum bicolor
Sobic.003G018000 1.0kb upstream 1.0kb upstream 4319 true Chr03: 1595535-1599853 Sorghum bicolor
Sobic.003G018000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1598854-1599853 Sorghum bicolor
Sobic.003G018000 1.0kb downstream 1.0kb downstream 4319 true Chr03: 1594535-1598853 Sorghum bicolor
Sobic.003G018000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1594535-1595534 Sorghum bicolor
Sobic.003G018000 2.0kb upstream 2.0kb upstream 5319 true Chr03: 1595535-1600853 Sorghum bicolor
Sobic.003G018000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1598854-1600853 Sorghum bicolor
Sobic.003G018000 2.0kb downstream 2.0kb downstream 5319 true Chr03: 1593535-1598853 Sorghum bicolor
Sobic.003G018000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1593535-1595534 Sorghum bicolor
Sobic.003G018000 5.0kb upstream 5.0kb upstream 8319 true Chr03: 1595535-1603853 Sorghum bicolor
Sobic.003G018000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1598854-1603853 Sorghum bicolor
Sobic.003G018000 5.0kb downstream 5.0kb downstream 8319 true Chr03: 1590535-1598853 Sorghum bicolor
Sobic.003G018000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1590535-1595534 Sorghum bicolor
Sobic.003G018000 10.0kb upstream 10.0kb upstream 13319 true Chr03: 1595535-1608853 Sorghum bicolor
Sobic.003G018000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1598854-1608853 Sorghum bicolor
Sobic.003G018000 10.0kb downstream 10.0kb downstream 13319 true Chr03: 1585535-1598853 Sorghum bicolor
Sobic.003G018000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1585535-1595534 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184877 5267 Panicoideae View MSA
124586143 5269 Grass View MSA
122049695 5273 Angiosperm View MSA
121311547 5274 Embryophyte View MSA
123348830 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.047     Low  
cufflinks 0.038     Low  
cufflinks 0.034     Low  
cufflinks 0.002     Low Low
cufflinks 0.397        
cufflinks 0.021     Low  
cufflinks 0.07     Low  
cufflinks 0.302        
cufflinks 0.005     Low Low
cufflinks 0.01     Low Low
cufflinks 0.444        
cufflinks 0.026     Low  
cufflinks 0.106        
cufflinks 0.017     Low  
cufflinks 2.914       High
cufflinks 0.03     Low  
cufflinks 0.075     Low  
cufflinks 0.022     Low  
cufflinks 0.191        
cufflinks 0.047     Low  
cufflinks 0.004     Low Low
cufflinks 0.038     Low  
cufflinks 0.007     Low Low
cufflinks 0.005     Low Low
cufflinks 0.007     Low Low
cufflinks 0.063        
cufflinks 0.1        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.701       High
cufflinks 3.348       High

0 Strain