Gene : Sobic.003G023800 S. bicolor v3.1.1
Defline:  (1 of 11) 3.5.1.52 - Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase / N-oligosaccharide glycopeptidase Genomic Order:  248
Name:  ? Sobic.003G023800 Secondary Identifier:  ? PAC:37912718
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G023800 0.5kb upstream 0.5kb upstream 3101 true Chr03: 2051541-2054641 Sorghum bicolor
Sobic.003G023800 0.5kb upstream 0.5kb upstream 500 false Chr03: 2051541-2052040 Sorghum bicolor
Sobic.003G023800 0.5kb downstream 0.5kb downstream 3101 true Chr03: 2052041-2055141 Sorghum bicolor
Sobic.003G023800 0.5kb downstream 0.5kb downstream 500 false Chr03: 2054642-2055141 Sorghum bicolor
Sobic.003G023800 1.0kb upstream 1.0kb upstream 3601 true Chr03: 2051041-2054641 Sorghum bicolor
Sobic.003G023800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 2051041-2052040 Sorghum bicolor
Sobic.003G023800 1.0kb downstream 1.0kb downstream 3601 true Chr03: 2052041-2055641 Sorghum bicolor
Sobic.003G023800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 2054642-2055641 Sorghum bicolor
Sobic.003G023800 2.0kb upstream 2.0kb upstream 4601 true Chr03: 2050041-2054641 Sorghum bicolor
Sobic.003G023800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 2050041-2052040 Sorghum bicolor
Sobic.003G023800 2.0kb downstream 2.0kb downstream 4601 true Chr03: 2052041-2056641 Sorghum bicolor
Sobic.003G023800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 2054642-2056641 Sorghum bicolor
Sobic.003G023800 5.0kb upstream 5.0kb upstream 7601 true Chr03: 2047041-2054641 Sorghum bicolor
Sobic.003G023800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 2047041-2052040 Sorghum bicolor
Sobic.003G023800 5.0kb downstream 5.0kb downstream 7601 true Chr03: 2052041-2059641 Sorghum bicolor
Sobic.003G023800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 2054642-2059641 Sorghum bicolor
Sobic.003G023800 10.0kb upstream 10.0kb upstream 12601 true Chr03: 2042041-2054641 Sorghum bicolor
Sobic.003G023800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 2042041-2052040 Sorghum bicolor
Sobic.003G023800 10.0kb downstream 10.0kb downstream 12601 true Chr03: 2052041-2064641 Sorghum bicolor
Sobic.003G023800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 2054642-2064641 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197440 5267 Panicoideae View MSA
124574392 5269 Grass View MSA
122047638 5273 Angiosperm View MSA
121344579 5274 Embryophyte View MSA
123380069 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.141       Low
cufflinks 11.325     High  
cufflinks 0.872        
cufflinks 0.214       Low
cufflinks 1.226        
cufflinks 11.566        
cufflinks 12.914     High  
cufflinks 34.956     High High
cufflinks 0.542       Low
cufflinks 0.271       Low
cufflinks 3.583        
cufflinks 3.321        
cufflinks 0.678        
cufflinks 4.282        
cufflinks 3.682        
cufflinks 2.617        
cufflinks 8.466        
cufflinks 10.463        
cufflinks 13.986     High High
cufflinks 3.827        
cufflinks 0.094     Low Low
cufflinks 8.302        
cufflinks 2.911        
cufflinks 2.471        
cufflinks 8.597     High  
cufflinks 13.86     High High
cufflinks 1.399        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 18.423     High High
cufflinks 3.981        

0 Strain