Gene : Sobic.003G033700 S. bicolor v3.1.1
Defline:  (1 of 2) K15326 - tRNA-splicing endonuclease subunit Sen54 (TSEN54) Genomic Order:  351
Name:  ? Sobic.003G033700 Secondary Identifier:  ? PAC:37916479
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G033700 0.5kb upstream 0.5kb upstream 3123 true Chr03: 3076239-3079361 Sorghum bicolor
Sobic.003G033700 0.5kb upstream 0.5kb upstream 500 false Chr03: 3076239-3076738 Sorghum bicolor
Sobic.003G033700 0.5kb downstream 0.5kb downstream 3123 true Chr03: 3076739-3079861 Sorghum bicolor
Sobic.003G033700 0.5kb downstream 0.5kb downstream 500 false Chr03: 3079362-3079861 Sorghum bicolor
Sobic.003G033700 1.0kb upstream 1.0kb upstream 3623 true Chr03: 3075739-3079361 Sorghum bicolor
Sobic.003G033700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 3075739-3076738 Sorghum bicolor
Sobic.003G033700 1.0kb downstream 1.0kb downstream 3623 true Chr03: 3076739-3080361 Sorghum bicolor
Sobic.003G033700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 3079362-3080361 Sorghum bicolor
Sobic.003G033700 2.0kb upstream 2.0kb upstream 4623 true Chr03: 3074739-3079361 Sorghum bicolor
Sobic.003G033700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 3074739-3076738 Sorghum bicolor
Sobic.003G033700 2.0kb downstream 2.0kb downstream 4623 true Chr03: 3076739-3081361 Sorghum bicolor
Sobic.003G033700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 3079362-3081361 Sorghum bicolor
Sobic.003G033700 5.0kb upstream 5.0kb upstream 7623 true Chr03: 3071739-3079361 Sorghum bicolor
Sobic.003G033700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 3071739-3076738 Sorghum bicolor
Sobic.003G033700 5.0kb downstream 5.0kb downstream 7623 true Chr03: 3076739-3084361 Sorghum bicolor
Sobic.003G033700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 3079362-3084361 Sorghum bicolor
Sobic.003G033700 10.0kb upstream 10.0kb upstream 12623 true Chr03: 3066739-3079361 Sorghum bicolor
Sobic.003G033700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 3066739-3076738 Sorghum bicolor
Sobic.003G033700 10.0kb downstream 10.0kb downstream 12623 true Chr03: 3076739-3089361 Sorghum bicolor
Sobic.003G033700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 3079362-3089361 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199042 5267 Panicoideae View MSA
124569312 5269 Grass View MSA
122051332 5273 Angiosperm View MSA
121351548 5274 Embryophyte View MSA
123382220 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.295        
cufflinks 0.24       Low
cufflinks 1.47        
cufflinks 2.401        
cufflinks 5.809       High
cufflinks 2.44        
cufflinks 1.685        
cufflinks 0.908        
cufflinks 4.034       High
cufflinks 2.991        
cufflinks 0.978        
cufflinks 1.959        
cufflinks 2.756        
cufflinks 1.643        
cufflinks 2.308        
cufflinks 0.487       Low
cufflinks 1.506        
cufflinks 1.43        
cufflinks 0.504       Low
cufflinks 2.616        
cufflinks 2.124        
cufflinks 1.364        
cufflinks 1.513        
cufflinks 1.264        
cufflinks 0.533       Low
cufflinks 0.345       Low
cufflinks 1.896        
cufflinks 1.372        
cufflinks 1.074        
cufflinks 2.706        

0 Strain