Gene : Sobic.003G077400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31412//PTHR31412:SF5 - FAMILY NOT NAMED // ZINC METALLOPROTEASE EGY2, CHLOROPLASTIC-RELATED Genomic Order:  810
Name:  ? Sobic.003G077400 Secondary Identifier:  ? PAC:37915300
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G077400 0.5kb upstream 0.5kb upstream 4960 true Chr03: 6599302-6604261 Sorghum bicolor
Sobic.003G077400 0.5kb upstream 0.5kb upstream 500 false Chr03: 6599302-6599801 Sorghum bicolor
Sobic.003G077400 0.5kb downstream 0.5kb downstream 4960 true Chr03: 6599802-6604761 Sorghum bicolor
Sobic.003G077400 0.5kb downstream 0.5kb downstream 500 false Chr03: 6604262-6604761 Sorghum bicolor
Sobic.003G077400 1.0kb upstream 1.0kb upstream 5460 true Chr03: 6598802-6604261 Sorghum bicolor
Sobic.003G077400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 6598802-6599801 Sorghum bicolor
Sobic.003G077400 1.0kb downstream 1.0kb downstream 5460 true Chr03: 6599802-6605261 Sorghum bicolor
Sobic.003G077400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 6604262-6605261 Sorghum bicolor
Sobic.003G077400 2.0kb upstream 2.0kb upstream 6460 true Chr03: 6597802-6604261 Sorghum bicolor
Sobic.003G077400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 6597802-6599801 Sorghum bicolor
Sobic.003G077400 2.0kb downstream 2.0kb downstream 6460 true Chr03: 6599802-6606261 Sorghum bicolor
Sobic.003G077400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 6604262-6606261 Sorghum bicolor
Sobic.003G077400 5.0kb upstream 5.0kb upstream 9460 true Chr03: 6594802-6604261 Sorghum bicolor
Sobic.003G077400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 6594802-6599801 Sorghum bicolor
Sobic.003G077400 5.0kb downstream 5.0kb downstream 9460 true Chr03: 6599802-6609261 Sorghum bicolor
Sobic.003G077400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 6604262-6609261 Sorghum bicolor
Sobic.003G077400 10.0kb upstream 10.0kb upstream 14460 true Chr03: 6589802-6604261 Sorghum bicolor
Sobic.003G077400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 6589802-6599801 Sorghum bicolor
Sobic.003G077400 10.0kb downstream 10.0kb downstream 14460 true Chr03: 6599802-6614261 Sorghum bicolor
Sobic.003G077400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 6604262-6614261 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175944 5267 Panicoideae View MSA
124573045 5269 Grass View MSA
122044367 5273 Angiosperm View MSA
121345535 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.111       Low
cufflinks 4.338       High
cufflinks 2.422       High
cufflinks 0.806        
cufflinks 0.496        
cufflinks 2.082        
cufflinks 2.562       High
cufflinks 3.921       High
cufflinks 0.377        
cufflinks 0.348        
cufflinks 0.104       Low
cufflinks 0.191        
cufflinks 0.243        
cufflinks 0.119       Low
cufflinks 0.954        
cufflinks 3.286       High
cufflinks 2.394       High
cufflinks 3.029       High
cufflinks 1.975        
cufflinks 1.198        
cufflinks 0.929        
cufflinks 0.127       Low
cufflinks 0.132       Low
cufflinks 0.145       Low
cufflinks 2.267        
cufflinks 4.606       High
cufflinks 0.194        
cufflinks 0.047     Low Low
cufflinks 5.449       High
cufflinks 1.093        

0 Strain