Gene : Sobic.003G094350 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11946:SF7 - LEUCINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  993
Name:  ? Sobic.003G094350 Secondary Identifier:  ? PAC:37918281
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G094350 0.5kb upstream 0.5kb upstream 10634 true Chr03: 8197013-8207646 Sorghum bicolor
Sobic.003G094350 0.5kb upstream 0.5kb upstream 500 false Chr03: 8197013-8197512 Sorghum bicolor
Sobic.003G094350 0.5kb downstream 0.5kb downstream 10634 true Chr03: 8197513-8208146 Sorghum bicolor
Sobic.003G094350 0.5kb downstream 0.5kb downstream 500 false Chr03: 8207647-8208146 Sorghum bicolor
Sobic.003G094350 1.0kb upstream 1.0kb upstream 11134 true Chr03: 8196513-8207646 Sorghum bicolor
Sobic.003G094350 1.0kb upstream 1.0kb upstream 1000 false Chr03: 8196513-8197512 Sorghum bicolor
Sobic.003G094350 1.0kb downstream 1.0kb downstream 11134 true Chr03: 8197513-8208646 Sorghum bicolor
Sobic.003G094350 1.0kb downstream 1.0kb downstream 1000 false Chr03: 8207647-8208646 Sorghum bicolor
Sobic.003G094350 2.0kb upstream 2.0kb upstream 12134 true Chr03: 8195513-8207646 Sorghum bicolor
Sobic.003G094350 2.0kb upstream 2.0kb upstream 2000 false Chr03: 8195513-8197512 Sorghum bicolor
Sobic.003G094350 2.0kb downstream 2.0kb downstream 12134 true Chr03: 8197513-8209646 Sorghum bicolor
Sobic.003G094350 2.0kb downstream 2.0kb downstream 2000 false Chr03: 8207647-8209646 Sorghum bicolor
Sobic.003G094350 5.0kb upstream 5.0kb upstream 15134 true Chr03: 8192513-8207646 Sorghum bicolor
Sobic.003G094350 5.0kb upstream 5.0kb upstream 5000 false Chr03: 8192513-8197512 Sorghum bicolor
Sobic.003G094350 5.0kb downstream 5.0kb downstream 15134 true Chr03: 8197513-8212646 Sorghum bicolor
Sobic.003G094350 5.0kb downstream 5.0kb downstream 5000 false Chr03: 8207647-8212646 Sorghum bicolor
Sobic.003G094350 10.0kb upstream 10.0kb upstream 20134 true Chr03: 8187513-8207646 Sorghum bicolor
Sobic.003G094350 10.0kb upstream 10.0kb upstream 10000 false Chr03: 8187513-8197512 Sorghum bicolor
Sobic.003G094350 10.0kb downstream 10.0kb downstream 20134 true Chr03: 8197513-8217646 Sorghum bicolor
Sobic.003G094350 10.0kb downstream 10.0kb downstream 10000 false Chr03: 8207647-8217646 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041369 5273 Angiosperm View MSA
122190357 5267 Panicoideae View MSA
124571312 5269 Grass View MSA
121347479 5274 Embryophyte View MSA
123424257 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.196       Low
cufflinks 7.54     High High
cufflinks 8.655       High
cufflinks 3.754        
cufflinks 2.34        
cufflinks 5.726        
cufflinks 8.712       High
cufflinks 11.856     High High
cufflinks 2.652        
cufflinks 1.864        
cufflinks 0.548       Low
cufflinks 0.758        
cufflinks 1.536        
cufflinks 0.481       Low
cufflinks 3.296        
cufflinks 8.971       High
cufflinks 8.223       High
cufflinks 11.189       High
cufflinks 6.027        
cufflinks 5.232        
cufflinks 3.215        
cufflinks 0.468       Low
cufflinks 0.765        
cufflinks 0.68        
cufflinks 4.237        
cufflinks 8.452     High High
cufflinks 0.959        
cufflinks 0.123       Low
cufflinks 18.025     High High
cufflinks 3.24        

0 Strain