Gene : Sobic.003G038500 S. bicolor v3.1.1
Defline:  (1 of 2) K09272 - structure-specific recognition protein 1 (SSRP1) Genomic Order:  404
Name:  ? Sobic.003G038500 Secondary Identifier:  ? PAC:37914683
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G038500 0.5kb upstream 0.5kb upstream 7503 true Chr03: 3592327-3599829 Sorghum bicolor
Sobic.003G038500 0.5kb upstream 0.5kb upstream 500 false Chr03: 3599330-3599829 Sorghum bicolor
Sobic.003G038500 0.5kb downstream 0.5kb downstream 7503 true Chr03: 3591827-3599329 Sorghum bicolor
Sobic.003G038500 0.5kb downstream 0.5kb downstream 500 false Chr03: 3591827-3592326 Sorghum bicolor
Sobic.003G038500 1.0kb upstream 1.0kb upstream 8003 true Chr03: 3592327-3600329 Sorghum bicolor
Sobic.003G038500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 3599330-3600329 Sorghum bicolor
Sobic.003G038500 1.0kb downstream 1.0kb downstream 8003 true Chr03: 3591327-3599329 Sorghum bicolor
Sobic.003G038500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 3591327-3592326 Sorghum bicolor
Sobic.003G038500 2.0kb upstream 2.0kb upstream 9003 true Chr03: 3592327-3601329 Sorghum bicolor
Sobic.003G038500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 3599330-3601329 Sorghum bicolor
Sobic.003G038500 2.0kb downstream 2.0kb downstream 9003 true Chr03: 3590327-3599329 Sorghum bicolor
Sobic.003G038500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 3590327-3592326 Sorghum bicolor
Sobic.003G038500 5.0kb upstream 5.0kb upstream 12003 true Chr03: 3592327-3604329 Sorghum bicolor
Sobic.003G038500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 3599330-3604329 Sorghum bicolor
Sobic.003G038500 5.0kb downstream 5.0kb downstream 12003 true Chr03: 3587327-3599329 Sorghum bicolor
Sobic.003G038500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 3587327-3592326 Sorghum bicolor
Sobic.003G038500 10.0kb upstream 10.0kb upstream 17003 true Chr03: 3592327-3609329 Sorghum bicolor
Sobic.003G038500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 3599330-3609329 Sorghum bicolor
Sobic.003G038500 10.0kb downstream 10.0kb downstream 17003 true Chr03: 3582327-3599329 Sorghum bicolor
Sobic.003G038500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 3582327-3592326 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182910 5267 Panicoideae View MSA
124586936 5269 Grass View MSA
122041570 5273 Angiosperm View MSA
121347609 5274 Embryophyte View MSA
123424150 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.022     High  
cufflinks 15.878     High Low
cufflinks 34.551     High  
cufflinks 40.52     High  
cufflinks 34.006     High  
cufflinks 35.35     High  
cufflinks 29.146     High  
cufflinks 15.075     High Low
cufflinks 53.664     High High
cufflinks 49.669     High High
cufflinks 31.367     High  
cufflinks 39.231     High  
cufflinks 38.417     High  
cufflinks 30.245     High  
cufflinks 33.753     High  
cufflinks 34.671     High  
cufflinks 30.535     High  
cufflinks 32.266     High  
cufflinks 28.053     High  
cufflinks 42.957     High  
cufflinks 72.458     High High
cufflinks 29.909     High  
cufflinks 34.995     High  
cufflinks 32.096     High  
cufflinks 23.593     High  
cufflinks 13.222     High Low
cufflinks 35.116     High  
cufflinks 56.453     High High
cufflinks 20.031     High Low
cufflinks 41.605     High  

0 Strain