Gene : Sobic.003G126500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10277//PTHR10277:SF41 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1320
Name:  ? Sobic.003G126500 Secondary Identifier:  ? PAC:37918646
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor LEU-DEG2-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G126500 0.5kb upstream 0.5kb upstream 7166 true Chr03: 11601316-11608481 Sorghum bicolor
Sobic.003G126500 0.5kb upstream 0.5kb upstream 500 false Chr03: 11607982-11608481 Sorghum bicolor
Sobic.003G126500 0.5kb downstream 0.5kb downstream 7166 true Chr03: 11600816-11607981 Sorghum bicolor
Sobic.003G126500 0.5kb downstream 0.5kb downstream 500 false Chr03: 11600816-11601315 Sorghum bicolor
Sobic.003G126500 1.0kb upstream 1.0kb upstream 7666 true Chr03: 11601316-11608981 Sorghum bicolor
Sobic.003G126500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 11607982-11608981 Sorghum bicolor
Sobic.003G126500 1.0kb downstream 1.0kb downstream 7666 true Chr03: 11600316-11607981 Sorghum bicolor
Sobic.003G126500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 11600316-11601315 Sorghum bicolor
Sobic.003G126500 2.0kb upstream 2.0kb upstream 8666 true Chr03: 11601316-11609981 Sorghum bicolor
Sobic.003G126500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 11607982-11609981 Sorghum bicolor
Sobic.003G126500 2.0kb downstream 2.0kb downstream 8666 true Chr03: 11599316-11607981 Sorghum bicolor
Sobic.003G126500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 11599316-11601315 Sorghum bicolor
Sobic.003G126500 5.0kb upstream 5.0kb upstream 11666 true Chr03: 11601316-11612981 Sorghum bicolor
Sobic.003G126500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 11607982-11612981 Sorghum bicolor
Sobic.003G126500 5.0kb downstream 5.0kb downstream 11666 true Chr03: 11596316-11607981 Sorghum bicolor
Sobic.003G126500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 11596316-11601315 Sorghum bicolor
Sobic.003G126500 10.0kb upstream 10.0kb upstream 16666 true Chr03: 11601316-11617981 Sorghum bicolor
Sobic.003G126500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 11607982-11617981 Sorghum bicolor
Sobic.003G126500 10.0kb downstream 10.0kb downstream 16666 true Chr03: 11591316-11607981 Sorghum bicolor
Sobic.003G126500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 11591316-11601315 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195839 5267 Panicoideae View MSA
124575299 5269 Grass View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.844       High
cufflinks 0.675       Low
cufflinks 1.223       Low
cufflinks 2.937        
cufflinks 2.734        
cufflinks 4.077        
cufflinks 1.555        
cufflinks 1.292       Low
cufflinks 4.607        
cufflinks 4.335        
cufflinks 3.826        
cufflinks 3.179        
cufflinks 3.233        
cufflinks 4.986        
cufflinks 2.968        
cufflinks 1.68        
cufflinks 1.625        
cufflinks 1.692        
cufflinks 1.653        
cufflinks 2.162        
cufflinks 3.04        
cufflinks 4.663        
cufflinks 2.801        
cufflinks 3.103        
cufflinks 1.853        
cufflinks 0.982       Low
cufflinks 3.163        
cufflinks 22.387     High High
cufflinks 1.924        
cufflinks 2.918        

0 Strain