Gene : Sobic.003G132300 S. bicolor v3.1.1
Defline:  (1 of 3) PTHR24078:SF261 - DNAJ (HSP40) HOMOLOG, SUBFAMILY A, MEMBER 3A Genomic Order:  1387
Name:  ? Sobic.003G132300 Secondary Identifier:  ? PAC:37918190
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G132300 0.5kb upstream 0.5kb upstream 2178 true Chr03: 12440094-12442271 Sorghum bicolor
Sobic.003G132300 0.5kb upstream 0.5kb upstream 500 false Chr03: 12440094-12440593 Sorghum bicolor
Sobic.003G132300 0.5kb downstream 0.5kb downstream 2178 true Chr03: 12440594-12442771 Sorghum bicolor
Sobic.003G132300 0.5kb downstream 0.5kb downstream 500 false Chr03: 12442272-12442771 Sorghum bicolor
Sobic.003G132300 1.0kb upstream 1.0kb upstream 2678 true Chr03: 12439594-12442271 Sorghum bicolor
Sobic.003G132300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 12439594-12440593 Sorghum bicolor
Sobic.003G132300 1.0kb downstream 1.0kb downstream 2678 true Chr03: 12440594-12443271 Sorghum bicolor
Sobic.003G132300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 12442272-12443271 Sorghum bicolor
Sobic.003G132300 2.0kb upstream 2.0kb upstream 3678 true Chr03: 12438594-12442271 Sorghum bicolor
Sobic.003G132300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 12438594-12440593 Sorghum bicolor
Sobic.003G132300 2.0kb downstream 2.0kb downstream 3678 true Chr03: 12440594-12444271 Sorghum bicolor
Sobic.003G132300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 12442272-12444271 Sorghum bicolor
Sobic.003G132300 5.0kb upstream 5.0kb upstream 6678 true Chr03: 12435594-12442271 Sorghum bicolor
Sobic.003G132300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 12435594-12440593 Sorghum bicolor
Sobic.003G132300 5.0kb downstream 5.0kb downstream 6678 true Chr03: 12440594-12447271 Sorghum bicolor
Sobic.003G132300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 12442272-12447271 Sorghum bicolor
Sobic.003G132300 10.0kb upstream 10.0kb upstream 11678 true Chr03: 12430594-12442271 Sorghum bicolor
Sobic.003G132300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 12430594-12440593 Sorghum bicolor
Sobic.003G132300 10.0kb downstream 10.0kb downstream 11678 true Chr03: 12440594-12452271 Sorghum bicolor
Sobic.003G132300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 12442272-12452271 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192140 5267 Panicoideae View MSA
124570180 5269 Grass View MSA
122045009 5273 Angiosperm View MSA
121349410 5274 Embryophyte View MSA
123426863 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.498       Low
cufflinks 6.641     High High
cufflinks 2.509        
cufflinks 1.912        
cufflinks 0.604       Low
cufflinks 4.777        
cufflinks 5.442       High
cufflinks 9.208     High High
cufflinks 2.032        
cufflinks 1.506        
cufflinks 0.922        
cufflinks 0.895        
cufflinks 1.293        
cufflinks 1.222        
cufflinks 1.032        
cufflinks 8.778       High
cufflinks 7.763       High
cufflinks 7.843       High
cufflinks 6.25       High
cufflinks 7.074       High
cufflinks 1.107        
cufflinks 1.13        
cufflinks 0.564       Low
cufflinks 0.38       Low
cufflinks 2.657        
cufflinks 4.418        
cufflinks 0.539       Low
cufflinks 0.512       Low
cufflinks 6.939       High
cufflinks 1.603        

0 Strain