Gene : Sobic.003G141100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11735//PTHR11735:SF12 - O-SIALOGLYCOPROTEIN ENDOPEPTIDASE // TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE, MITOCHONDRIAL-RELATED Genomic Order:  1478
Name:  ? Sobic.003G141100 Secondary Identifier:  ? PAC:37917171
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-1587 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G141100 0.5kb upstream 0.5kb upstream 12050 true Chr03: 13754675-13766724 Sorghum bicolor
Sobic.003G141100 0.5kb upstream 0.5kb upstream 500 false Chr03: 13766225-13766724 Sorghum bicolor
Sobic.003G141100 0.5kb downstream 0.5kb downstream 12050 true Chr03: 13754175-13766224 Sorghum bicolor
Sobic.003G141100 0.5kb downstream 0.5kb downstream 500 false Chr03: 13754175-13754674 Sorghum bicolor
Sobic.003G141100 1.0kb upstream 1.0kb upstream 12550 true Chr03: 13754675-13767224 Sorghum bicolor
Sobic.003G141100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 13766225-13767224 Sorghum bicolor
Sobic.003G141100 1.0kb downstream 1.0kb downstream 12550 true Chr03: 13753675-13766224 Sorghum bicolor
Sobic.003G141100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 13753675-13754674 Sorghum bicolor
Sobic.003G141100 2.0kb upstream 2.0kb upstream 13550 true Chr03: 13754675-13768224 Sorghum bicolor
Sobic.003G141100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 13766225-13768224 Sorghum bicolor
Sobic.003G141100 2.0kb downstream 2.0kb downstream 13550 true Chr03: 13752675-13766224 Sorghum bicolor
Sobic.003G141100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 13752675-13754674 Sorghum bicolor
Sobic.003G141100 5.0kb upstream 5.0kb upstream 16550 true Chr03: 13754675-13771224 Sorghum bicolor
Sobic.003G141100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 13766225-13771224 Sorghum bicolor
Sobic.003G141100 5.0kb downstream 5.0kb downstream 16550 true Chr03: 13749675-13766224 Sorghum bicolor
Sobic.003G141100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 13749675-13754674 Sorghum bicolor
Sobic.003G141100 10.0kb upstream 10.0kb upstream 21550 true Chr03: 13754675-13776224 Sorghum bicolor
Sobic.003G141100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 13766225-13776224 Sorghum bicolor
Sobic.003G141100 10.0kb downstream 10.0kb downstream 21550 true Chr03: 13744675-13766224 Sorghum bicolor
Sobic.003G141100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 13744675-13754674 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195272 5267 Panicoideae View MSA
124572506 5269 Grass View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.301       Low
cufflinks 2.233       High
cufflinks 1.695       High
cufflinks 1.148        
cufflinks 0.556        
cufflinks 1.409        
cufflinks 1.588       High
cufflinks 2.405       High
cufflinks 0.882        
cufflinks 0.708        
cufflinks 0.351       Low
cufflinks 0.541        
cufflinks 0.583        
cufflinks 0.441        
cufflinks 0.674        
cufflinks 1.903       High
cufflinks 1.463        
cufflinks 1.911       High
cufflinks 1.005        
cufflinks 0.969        
cufflinks 1.111        
cufflinks 0.403        
cufflinks 0.418        
cufflinks 0.415        
cufflinks 1.221        
cufflinks 2.509       High
cufflinks 0.553        
cufflinks 0.236       Low
cufflinks 2.532       High
cufflinks 0.712        

0 Strain