Gene : Sobic.003G151000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13495//PTHR13495:SF0 - NEFA-INTERACTING NUCLEAR PROTEIN NIP30 // PROTEIN FAM192A Genomic Order:  1580
Name:  ? Sobic.003G151000 Secondary Identifier:  ? PAC:37913853
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G151000 0.5kb upstream 0.5kb upstream 4932 true Chr03: 15902982-15907913 Sorghum bicolor
Sobic.003G151000 0.5kb upstream 0.5kb upstream 500 false Chr03: 15902982-15903481 Sorghum bicolor
Sobic.003G151000 0.5kb downstream 0.5kb downstream 4932 true Chr03: 15903482-15908413 Sorghum bicolor
Sobic.003G151000 0.5kb downstream 0.5kb downstream 500 false Chr03: 15907914-15908413 Sorghum bicolor
Sobic.003G151000 1.0kb upstream 1.0kb upstream 5432 true Chr03: 15902482-15907913 Sorghum bicolor
Sobic.003G151000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 15902482-15903481 Sorghum bicolor
Sobic.003G151000 1.0kb downstream 1.0kb downstream 5432 true Chr03: 15903482-15908913 Sorghum bicolor
Sobic.003G151000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 15907914-15908913 Sorghum bicolor
Sobic.003G151000 2.0kb upstream 2.0kb upstream 6432 true Chr03: 15901482-15907913 Sorghum bicolor
Sobic.003G151000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 15901482-15903481 Sorghum bicolor
Sobic.003G151000 2.0kb downstream 2.0kb downstream 6432 true Chr03: 15903482-15909913 Sorghum bicolor
Sobic.003G151000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 15907914-15909913 Sorghum bicolor
Sobic.003G151000 5.0kb upstream 5.0kb upstream 9432 true Chr03: 15898482-15907913 Sorghum bicolor
Sobic.003G151000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 15898482-15903481 Sorghum bicolor
Sobic.003G151000 5.0kb downstream 5.0kb downstream 9432 true Chr03: 15903482-15912913 Sorghum bicolor
Sobic.003G151000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 15907914-15912913 Sorghum bicolor
Sobic.003G151000 10.0kb upstream 10.0kb upstream 14432 true Chr03: 15893482-15907913 Sorghum bicolor
Sobic.003G151000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 15893482-15903481 Sorghum bicolor
Sobic.003G151000 10.0kb downstream 10.0kb downstream 14432 true Chr03: 15903482-15917913 Sorghum bicolor
Sobic.003G151000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 15907914-15917913 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175281 5267 Panicoideae View MSA
124569896 5269 Grass View MSA
122047119 5273 Angiosperm View MSA
121346332 5274 Embryophyte View MSA
123425229 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.808       High
cufflinks 0.989       Low
cufflinks 1.067       Low
cufflinks 1.828        
cufflinks 1.567        
cufflinks 2.833       High
cufflinks 1.496        
cufflinks 0.969       Low
cufflinks 2.493       High
cufflinks 2.719       High
cufflinks 1.617        
cufflinks 1.508        
cufflinks 2.222        
cufflinks 1.491        
cufflinks 2.211        
cufflinks 1.704        
cufflinks 1.664        
cufflinks 1.742        
cufflinks 1.352        
cufflinks 1.937        
cufflinks 3.223       High
cufflinks 2.162        
cufflinks 1.583        
cufflinks 1.715        
cufflinks 1.721        
cufflinks 0.919       Low
cufflinks 1.377        
cufflinks 1.839        
cufflinks 1.424        
cufflinks 2.368       High

0 Strain