Gene : Sobic.003G110600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22835//PTHR22835:SF207 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1154
Name:  ? Sobic.003G110600 Secondary Identifier:  ? PAC:37913957
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor LIPAS-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G110600 0.5kb upstream 0.5kb upstream 2103 true Chr03: 9956779-9958881 Sorghum bicolor
Sobic.003G110600 0.5kb upstream 0.5kb upstream 500 false Chr03: 9958382-9958881 Sorghum bicolor
Sobic.003G110600 0.5kb downstream 0.5kb downstream 2103 true Chr03: 9956279-9958381 Sorghum bicolor
Sobic.003G110600 0.5kb downstream 0.5kb downstream 500 false Chr03: 9956279-9956778 Sorghum bicolor
Sobic.003G110600 1.0kb upstream 1.0kb upstream 2603 true Chr03: 9956779-9959381 Sorghum bicolor
Sobic.003G110600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 9958382-9959381 Sorghum bicolor
Sobic.003G110600 1.0kb downstream 1.0kb downstream 2603 true Chr03: 9955779-9958381 Sorghum bicolor
Sobic.003G110600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 9955779-9956778 Sorghum bicolor
Sobic.003G110600 2.0kb upstream 2.0kb upstream 3603 true Chr03: 9956779-9960381 Sorghum bicolor
Sobic.003G110600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 9958382-9960381 Sorghum bicolor
Sobic.003G110600 2.0kb downstream 2.0kb downstream 3603 true Chr03: 9954779-9958381 Sorghum bicolor
Sobic.003G110600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 9954779-9956778 Sorghum bicolor
Sobic.003G110600 5.0kb upstream 5.0kb upstream 6603 true Chr03: 9956779-9963381 Sorghum bicolor
Sobic.003G110600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 9958382-9963381 Sorghum bicolor
Sobic.003G110600 5.0kb downstream 5.0kb downstream 6603 true Chr03: 9951779-9958381 Sorghum bicolor
Sobic.003G110600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 9951779-9956778 Sorghum bicolor
Sobic.003G110600 10.0kb upstream 10.0kb upstream 11603 true Chr03: 9956779-9968381 Sorghum bicolor
Sobic.003G110600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 9958382-9968381 Sorghum bicolor
Sobic.003G110600 10.0kb downstream 10.0kb downstream 11603 true Chr03: 9946779-9958381 Sorghum bicolor
Sobic.003G110600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 9946779-9956778 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180001 5267 Panicoideae View MSA
124585315 5269 Grass View MSA
122042489 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.945       High
cufflinks 0.06     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.99       High
cufflinks 0.657        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.474        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.441        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain