Gene : Sobic.003G112800 S. bicolor v3.1.1
Defline:  (1 of 2) K09494 - T-complex protein 1 subunit beta (CCT2) Genomic Order:  1177
Name:  ? Sobic.003G112800 Secondary Identifier:  ? PAC:37914249
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G112800 0.5kb upstream 0.5kb upstream 5942 true Chr03: 10127739-10133680 Sorghum bicolor
Sobic.003G112800 0.5kb upstream 0.5kb upstream 500 false Chr03: 10127739-10128238 Sorghum bicolor
Sobic.003G112800 0.5kb downstream 0.5kb downstream 5942 true Chr03: 10128239-10134180 Sorghum bicolor
Sobic.003G112800 0.5kb downstream 0.5kb downstream 500 false Chr03: 10133681-10134180 Sorghum bicolor
Sobic.003G112800 1.0kb upstream 1.0kb upstream 6442 true Chr03: 10127239-10133680 Sorghum bicolor
Sobic.003G112800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 10127239-10128238 Sorghum bicolor
Sobic.003G112800 1.0kb downstream 1.0kb downstream 6442 true Chr03: 10128239-10134680 Sorghum bicolor
Sobic.003G112800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 10133681-10134680 Sorghum bicolor
Sobic.003G112800 2.0kb upstream 2.0kb upstream 7442 true Chr03: 10126239-10133680 Sorghum bicolor
Sobic.003G112800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 10126239-10128238 Sorghum bicolor
Sobic.003G112800 2.0kb downstream 2.0kb downstream 7442 true Chr03: 10128239-10135680 Sorghum bicolor
Sobic.003G112800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 10133681-10135680 Sorghum bicolor
Sobic.003G112800 5.0kb upstream 5.0kb upstream 10442 true Chr03: 10123239-10133680 Sorghum bicolor
Sobic.003G112800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 10123239-10128238 Sorghum bicolor
Sobic.003G112800 5.0kb downstream 5.0kb downstream 10442 true Chr03: 10128239-10138680 Sorghum bicolor
Sobic.003G112800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 10133681-10138680 Sorghum bicolor
Sobic.003G112800 10.0kb upstream 10.0kb upstream 15442 true Chr03: 10118239-10133680 Sorghum bicolor
Sobic.003G112800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 10118239-10128238 Sorghum bicolor
Sobic.003G112800 10.0kb downstream 10.0kb downstream 15442 true Chr03: 10128239-10143680 Sorghum bicolor
Sobic.003G112800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 10133681-10143680 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190623 5267 Panicoideae View MSA
124571728 5269 Grass View MSA
122042218 5273 Angiosperm View MSA
121346616 5274 Embryophyte View MSA
123426772 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 72.736     High High
cufflinks 3.43       Low
cufflinks 13.687     High  
cufflinks 23.741     High  
cufflinks 24.339     High  
cufflinks 16.826     High  
cufflinks 20.15     High  
cufflinks 3.629       Low
cufflinks 31.818     High  
cufflinks 32.147     High  
cufflinks 32.017     High  
cufflinks 28.598     High  
cufflinks 17.588     High  
cufflinks 30.329     High  
cufflinks 19.444     High  
cufflinks 9.413       Low
cufflinks 23.191     High  
cufflinks 25.005     High  
cufflinks 10.213        
cufflinks 20.475     High  
cufflinks 39.357     High  
cufflinks 44.092     High  
cufflinks 41.426     High  
cufflinks 42.608     High  
cufflinks 7.32       Low
cufflinks 2.543       Low
cufflinks 23.168     High  
cufflinks 39.231     High  
cufflinks 13.977     High  
cufflinks 30.395     High  

0 Strain